KEGG   Epinephelus lanceolatus (giant grouper): 117268433
Entry
117268433         CDS       T07331                                 
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
ely  Epinephelus lanceolatus (giant grouper)
Pathway
ely03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ely00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117268433 (xab2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ely03019]
    117268433 (xab2)
   03041 Spliceosome [BR:ely03041]
    117268433 (xab2)
Messenger RNA biogenesis [BR:ely03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     117268433 (xab2)
Spliceosome [BR:ely03041]
 Complex B
  Other components
   Prp19-related factors
    117268433 (xab2)
 Complex C
    117268433 (xab2)
SSDB
Motif
Pfam: HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_C HAT_PRP39_N TPR_14 Suf TPR_2 TPR_12 TPR_8 TPR_15 ARM_TT21_C TPR_16 ARM_TT21 NRDE-2 TPR_MalT TPR_1 DUF2457 SNAP
Other DBs
NCBI-GeneID: 117268433
NCBI-ProteinID: XP_033500782
LinkDB
Position
16:21710190..21728602
AA seq 884 aa
MSIAVCNINKAKLLMSVVCSANMGGLGDSGPLGTDMQKAPHHFYIGEDDDLPYEEEIIRN
PYSVKCWMRYIEFKQNGAKSTLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCVTDPG
YEEINNCHERALVFMHKMPRIWLDYCQFLVSQCKITRSRQTFDRALRALPVTQHPRIWPL
YLRFVRNLPLPETAIRVYRRYLKLSPENAEEYIDYLRSVGRLDEAAVRLAAVVNDESFVS
KEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGH
FEKARDVYEEAILTVVTVRDFTQVFDSYAQFEESMIAAKMETTSEMGKDDDDDIDMELRL
ARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVKLYEGNPRQIINTYTEAVQTVDPMKAT
GKPHSLWVSFAKFYEENEQLDDARTIFEKATKVNYKQVDDLAAVWCEYGEMELRHENYEQ
ALRILRKATAIPSKKAEYFDASEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRII
DLRIATPQIIINYAMFLEEHNYFEESFKAYERGIALFRWPNVYDIWNTYLTKFIDRYGGK
KLERARDLFEQALDGCPAKFAKTIYLLYAKLEEGYGLARHAMAVYERATQAVETEERHHM
FNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHARDMCLRFADMESKLGEIDRARAIYSYC
SQICDPRVTANFWQTWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVNFMSSQMLKATTS
STGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQDKAKPKEKILFVRSDTSRSELAELSK
QANPDEIDIDDDDEDEDDDDQGPEEVQLEQKSVPTAVFGGLKDD
NT seq 2655 nt   +upstreamnt  +downstreamnt
atgtcaatagcagtctgcaatatcaataaagcaaagttattgatgtcagtggtttgctca
gccaacatgggtggattaggagacagtgggcccctgggcacagacatgcagaaggccccc
caccacttctatataggagaggacgatgatctgccttatgaagaggagattatcaggaac
ccctactcagtcaaatgctggatgcgttacatcgagttcaaacagaatggagccaaatcc
accctcaacatgatatatgaacgggccctgaaagagctgcccggcagctataagctgtgg
tacaattatctgagagagagacgaaaacaagtcaaggggaaatgtgtcactgacccaggc
tatgaggagatcaataactgccacgaaagggcattggtgttcatgcataagatgcctaga
atttggctcgattactgccagttccttgtgtctcaatgcaagatcacaagaagtcggcaa
acatttgaccgtgcgctcagagctcttcctgttactcagcacccacgcatctggcctctg
tatctccgctttgtccgtaacctgcccctgcctgagactgccatccgggtgtaccgtagg
taccttaagctttctccagagaatgcagaggaatacatagactacttacgatctgttggc
cgcttggatgaagcagctgtgcgactagcagctgttgtcaatgatgaaagctttgtgtcc
aaagagggcaagtccaactatcaactgtggcatgagctctgtgacctgatctcccagaac
cctgataaagtgacctctctgaatgttggagccatcatccgagggggcctcactcgcttc
acagaccagcttggaaaactctggtgctctttagctgactattacatcaggagtggtcac
tttgagaaggcacgcgatgtgtatgaggaggccatccttacagtggtaacagtaagggat
ttcacacaagtgtttgatagttacgctcagtttgaagagagcatgattgcagcgaagatg
gagaccacctctgagatggggaaggatgatgatgatgacatagacatggagcttagactc
gctcgctttgagcagttgatagcccggcggcccctcctgttgaacagtgtactactgcgg
cagaaccctcataatgtccatgagtggcacaagcgggttaaactgtatgagggcaatcca
cggcagatcatcaacacatacacagaggcagtgcagacagtggatccaatgaaggccaca
gggaaacctcactctctctgggtttcctttgctaaattctatgaggaaaatgagcagctg
gatgatgccaggacaatttttgagaaggctaccaaggtgaactacaagcaggtggatgac
cttgccgcagtgtggtgtgaatatggagagatggagctacgccatgagaactatgaacag
gcactgcgcatactgaggaaagctacagccatcccatccaagaaagcagagtacttcgat
gcatctgagccagtccaaaacagagtttacaagtccttgaaggtctggtctatgctggcg
gacttggaggagagtctgggcacttttcagtctacaaaagcagtgtatgatcgcatcatt
gacctccgcatcgccacaccacagatcatcatcaactatgccatgttccttgaagagcac
aactactttgaggaaagcttcaaagcatatgagcgtggcattgctctcttcaggtggcca
aatgtttatgatatctggaacacataccttacgaagttcattgatcgttatgggggcaag
aagctggagagagccagagatttatttgaacaagctctggatggctgccctgcaaagttt
gccaagaccatttacctgttgtatgccaagttggaggagggatatggattggcacgacac
gccatggctgtctatgaaagagcaacgcaggcagtagaaactgaggagagacatcacatg
ttcaatatctacatcaagagagcagctgaaatttacggagtcacgtataccagagcaatt
taccagaaagctatcgaggtccttcctgatgagcatgcaagggacatgtgtctgcgattt
gctgacatggagagtaaacttggcgagattgatcgagccagagcaatctactcctactgc
tcccagatctgtgacccaagggtgactgcaaacttctggcagacctggaaagaattcgag
atccgccatggaaatgaggacacaattagagaaatgctgagaatcaaacgcagtgtccaa
gccacatacaacacccaggtcaactttatgtcctctcagatgctcaaggccacaacaagc
tccacaggtacagtgtccgatctcgctccaggccaaatgggaattgatgacatgaagatg
ttggagcagaaagcacagcagcttgctgcagaagccgaacaggacaaagccaagcctaaa
gaaaagattctctttgtcaggagtgacacctctcgcagtgagttggctgagctttccaaa
caagccaatcctgatgagattgacattgatgatgatgacgaggatgaagatgatgacgac
cagggaccagaagaggtgcagctagaacagaagagtgtccccacagctgtctttggaggg
cttaaagacgactga

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