Epinephelus lanceolatus (giant grouper): 117268433
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Entry
117268433 CDS
T07331
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117268433 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ely03019
]
117268433 (xab2)
03041 Spliceosome [BR:
ely03041
]
117268433 (xab2)
Messenger RNA biogenesis [BR:
ely03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117268433 (xab2)
Spliceosome [BR:
ely03041
]
Complex B
Other components
Prp19-related factors
117268433 (xab2)
Complex C
117268433 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
NRDE-2
TPR_MalT
TPR_1
DUF2457
SNAP
Motif
Other DBs
NCBI-GeneID:
117268433
NCBI-ProteinID:
XP_033500782
LinkDB
All DBs
Position
16:21710190..21728602
Genome browser
AA seq
884 aa
AA seq
DB search
MSIAVCNINKAKLLMSVVCSANMGGLGDSGPLGTDMQKAPHHFYIGEDDDLPYEEEIIRN
PYSVKCWMRYIEFKQNGAKSTLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCVTDPG
YEEINNCHERALVFMHKMPRIWLDYCQFLVSQCKITRSRQTFDRALRALPVTQHPRIWPL
YLRFVRNLPLPETAIRVYRRYLKLSPENAEEYIDYLRSVGRLDEAAVRLAAVVNDESFVS
KEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGH
FEKARDVYEEAILTVVTVRDFTQVFDSYAQFEESMIAAKMETTSEMGKDDDDDIDMELRL
ARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVKLYEGNPRQIINTYTEAVQTVDPMKAT
GKPHSLWVSFAKFYEENEQLDDARTIFEKATKVNYKQVDDLAAVWCEYGEMELRHENYEQ
ALRILRKATAIPSKKAEYFDASEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRII
DLRIATPQIIINYAMFLEEHNYFEESFKAYERGIALFRWPNVYDIWNTYLTKFIDRYGGK
KLERARDLFEQALDGCPAKFAKTIYLLYAKLEEGYGLARHAMAVYERATQAVETEERHHM
FNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHARDMCLRFADMESKLGEIDRARAIYSYC
SQICDPRVTANFWQTWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVNFMSSQMLKATTS
STGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQDKAKPKEKILFVRSDTSRSELAELSK
QANPDEIDIDDDDEDEDDDDQGPEEVQLEQKSVPTAVFGGLKDD
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatagcagtctgcaatatcaataaagcaaagttattgatgtcagtggtttgctca
gccaacatgggtggattaggagacagtgggcccctgggcacagacatgcagaaggccccc
caccacttctatataggagaggacgatgatctgccttatgaagaggagattatcaggaac
ccctactcagtcaaatgctggatgcgttacatcgagttcaaacagaatggagccaaatcc
accctcaacatgatatatgaacgggccctgaaagagctgcccggcagctataagctgtgg
tacaattatctgagagagagacgaaaacaagtcaaggggaaatgtgtcactgacccaggc
tatgaggagatcaataactgccacgaaagggcattggtgttcatgcataagatgcctaga
atttggctcgattactgccagttccttgtgtctcaatgcaagatcacaagaagtcggcaa
acatttgaccgtgcgctcagagctcttcctgttactcagcacccacgcatctggcctctg
tatctccgctttgtccgtaacctgcccctgcctgagactgccatccgggtgtaccgtagg
taccttaagctttctccagagaatgcagaggaatacatagactacttacgatctgttggc
cgcttggatgaagcagctgtgcgactagcagctgttgtcaatgatgaaagctttgtgtcc
aaagagggcaagtccaactatcaactgtggcatgagctctgtgacctgatctcccagaac
cctgataaagtgacctctctgaatgttggagccatcatccgagggggcctcactcgcttc
acagaccagcttggaaaactctggtgctctttagctgactattacatcaggagtggtcac
tttgagaaggcacgcgatgtgtatgaggaggccatccttacagtggtaacagtaagggat
ttcacacaagtgtttgatagttacgctcagtttgaagagagcatgattgcagcgaagatg
gagaccacctctgagatggggaaggatgatgatgatgacatagacatggagcttagactc
gctcgctttgagcagttgatagcccggcggcccctcctgttgaacagtgtactactgcgg
cagaaccctcataatgtccatgagtggcacaagcgggttaaactgtatgagggcaatcca
cggcagatcatcaacacatacacagaggcagtgcagacagtggatccaatgaaggccaca
gggaaacctcactctctctgggtttcctttgctaaattctatgaggaaaatgagcagctg
gatgatgccaggacaatttttgagaaggctaccaaggtgaactacaagcaggtggatgac
cttgccgcagtgtggtgtgaatatggagagatggagctacgccatgagaactatgaacag
gcactgcgcatactgaggaaagctacagccatcccatccaagaaagcagagtacttcgat
gcatctgagccagtccaaaacagagtttacaagtccttgaaggtctggtctatgctggcg
gacttggaggagagtctgggcacttttcagtctacaaaagcagtgtatgatcgcatcatt
gacctccgcatcgccacaccacagatcatcatcaactatgccatgttccttgaagagcac
aactactttgaggaaagcttcaaagcatatgagcgtggcattgctctcttcaggtggcca
aatgtttatgatatctggaacacataccttacgaagttcattgatcgttatgggggcaag
aagctggagagagccagagatttatttgaacaagctctggatggctgccctgcaaagttt
gccaagaccatttacctgttgtatgccaagttggaggagggatatggattggcacgacac
gccatggctgtctatgaaagagcaacgcaggcagtagaaactgaggagagacatcacatg
ttcaatatctacatcaagagagcagctgaaatttacggagtcacgtataccagagcaatt
taccagaaagctatcgaggtccttcctgatgagcatgcaagggacatgtgtctgcgattt
gctgacatggagagtaaacttggcgagattgatcgagccagagcaatctactcctactgc
tcccagatctgtgacccaagggtgactgcaaacttctggcagacctggaaagaattcgag
atccgccatggaaatgaggacacaattagagaaatgctgagaatcaaacgcagtgtccaa
gccacatacaacacccaggtcaactttatgtcctctcagatgctcaaggccacaacaagc
tccacaggtacagtgtccgatctcgctccaggccaaatgggaattgatgacatgaagatg
ttggagcagaaagcacagcagcttgctgcagaagccgaacaggacaaagccaagcctaaa
gaaaagattctctttgtcaggagtgacacctctcgcagtgagttggctgagctttccaaa
caagccaatcctgatgagattgacattgatgatgatgacgaggatgaagatgatgacgac
cagggaccagaagaggtgcagctagaacagaagagtgtccccacagctgtctttggaggg
cttaaagacgactga
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