Epinephelus lanceolatus (giant grouper): 117269209
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Entry
117269209 CDS
T07331
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
ely
Epinephelus lanceolatus (giant grouper)
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ely03021
]
117269209 (taf1c)
Transcription machinery [BR:
ely03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
117269209 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Beta-prop_WDR36-Utp21_1st
Motif
Other DBs
NCBI-GeneID:
117269209
NCBI-ProteinID:
XP_033501972
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Position
17:complement(4957846..4971235)
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AA seq
1089 aa
AA seq
DB search
MDYQFPQQLFPSFYNCGPPDSVLKHSAGSWGCYDRVRPQGSSGPLSSWTFTSRHQARGET
WRHTEPVPLPLLSPKNSFLWPSTPPDPLDFTEHMQNFFMDHSQDAFGCMGEILSSNFNFK
DGRREKYRKDSIHMWKMKKFLDTLKFKVCPQPYSCGTLDKYSALLSDVVPSVPPELLGPL
LYEELTEQRDRMLFSEGATGGALAFVPFSQSGSDSQRGCLLYPRNQGLDCLNFHRVELQH
HRGGSSCVDASSSDPFSFQLKGPVRQISAVSLLNDCCVAVRSDHLCGVWRFSERDEPRLL
QVVNTREVATCISVSPHVLGEVLVVSESGAANLWTVGRGMQKVREEDDNLYFNAKSSWRW
CEFSAHPRVMLYADRTGVELTDIRVSPASSHTLFRISSTPECRSGERLILSRYLGDVHPF
HHLITTQYSTYIMDERFPCMPMIKWDHMMQSPPMFCHTVRGSASSGSARATNILLGSQSS
QEITLLQYSGGRVEACSSRGPPQALHRPRDSLKHLPVQIPHRLDTATNRLSSPAAGLTCI
QTRGGREAGGEECICILQLTEAGDIFYQILEPEQPDTSRPPAADDAPLPQPALREATTSG
RKTAKQLQPHSQMVVSDTSSDEGVIGPTQAPTALRFVAETPEREQRVQDAYPDSSSEDSE
SRGRARNLKHLKVIVNDDPELDQASEVDAGVEDGKVADDPEEPVSGSGSLGSSESPTPVK
LSDGALVTWKHWLQKLMHKSREKKPRPRSLQHLTVETGDLLHLSDDGARDSAEEERVQNL
RRDLRACMSKRSLLVHSATSASLGAQDVVMVPNIVYTDAWTDQISHRLTLSWQGEEVWRA
WWEDQLGLNREEKVEALRRKRRREKEAKRASGRRLELSGSFTSSVSYQSELNDFSDSTGW
SSAVSQGAWSDTEGKLSQVDGFLESGTPRATTPSTLQTDTPVPRLTPTPVKDKLRDQQTP
SSFRTLALTQTPRLDPTPASQRRSRRPAEDYLHSLFAPQDEPSQHDGYFLEEGSAMHHPP
PPLSLSSSQLRSSQSVSQRSLRMDPSQDSSVWTSFSQSQSLLQGSQGRRALTQGSQGSQP
KKKKSRMGF
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atggattatcagttcccacagcagctgtttccctcgttttataactgcggacctccggac
tcggtcctgaagcacagcgccgggagctggggctgctacgaccgagtcagacctcagggc
agctctggtcctctctccagctggacattcacatccagacatcaggccagaggggagacg
tggcgtcacactgagccggtaccacttcctctcctgtccccgaaaaactctttcctctgg
ccgtcgacgcctccagatccactggacttcacagaacatatgcagaacttcttcatggac
cactcccaggacgccttcgggtgcatgggtgaaatcctgagcagcaacttcaacttcaaa
gacggaaggagagagaaatatcgcaaggattcaatccacatgtggaagatgaaaaaattc
ctcgacacgctgaagtttaaagtatgtccgcagccgtattcctgcgggacgctggacaag
tacagcgccctgctgtcggacgtggtgccctccgttcctcctgagctgctgggtcctctg
ctgtacgaggagctgacggagcagagagaccgcatgctgttctctgaaggagccacaggg
ggcgctttggcctttgtgcccttctcacagagcggcagcgactctcagcgcggctgcctc
ctctaccccagaaaccagggactggactgcctcaacttccacagagtggagctgcagcac
cacagaggaggttcttcctgtgtggacgccagcagcagtgacccgttcagctttcagctg
aaaggccccgtcagacagatcagcgccgtctctctgctcaacgactgttgtgtcgcagtg
cggtcagatcacctgtgtggcgtttggaggttcagtgaaagagacgaacctcgtctgctg
caagttgtcaacaccagagaggtggcgacctgcatcagcgtcagtcctcatgttttaggt
gaagttctggtggtgagtgagagcggagctgccaatctgtggactgtcggcagagggatg
cagaaggttcgagaggaagacgacaacctgtacttcaacgccaagtcgtcgtggagatgg
tgcgagttctccgcccatcccagggtgatgctgtatgcagacaggacgggggtggagctc
acagacatcagggtgagtcctgcctcgagtcacactctgtttcgtatcagcagcactccg
gagtgtcgcagtggggagagactcattctgtccagatatctaggagacgtccaccccttc
caccacctcatcaccacacagtactcgacgtacattatggatgagcgtttcccctgcatg
cccatgatcaagtgggatcacatgatgcagtcgccgcccatgttttgtcacactgttcgt
ggctctgcgtcctctggctcggctagggccacaaatatcctgctggggtcccagagctct
caggaaatcacgctgctgcagtactcaggaggcagagtggaggcctgttccagtcgaggt
cctcctcaggcgctgcacagacccagagacagtctgaaacaccttcctgtccagatcccg
caccgcctggacaccgcaaccaacagattgtcctcacctgctgcaggtctgacgtgtatc
cagacgagaggaggaagagaggcaggtggcgaggagtgtatctgtattctacagctgact
gaggcgggagatattttctaccagatcctcgagcctgaacagccggacacctcccgacct
cccgctgcagacgacgcaccgctgccacagccagctctgagagaagccacgacttcaggg
agaaaaaccgccaaacagcttcagccgcattctcagatggttgtatcggacacgtcgagc
gatgagggcgtcatcgggccgactcaggctccgactgcgctgaggtttgtggctgaaaca
cctgagagggaacaacgagtgcaggacgcctaccctgactcttcctctgaggactcagag
tccagagggagagctcgaaacctgaagcacctgaaggtgatcgtcaacgatgatccagag
ctggatcaagcgagtgaagtggacgcaggtgtggaagatggaaaggtggctgatgatcct
gaggaacccgtcagcggctccgggagtttgggttcctctgagagtccgactccagtgaag
ctcagcgacggcgctcttgtcacgtggaaacactggctccagaaattgatgcacaagagt
cgtgagaagaagccccgcccacgctcccttcagcacctcacagttgaaactggagacctc
ctccacctgtctgacgatggagcgagagattcggcagaggaggagcgtgtgcagaacctg
aggcgtgatctgagggcgtgcatgtcaaagcgctcgctgctggttcacagtgccacctct
gcgtccctcggtgctcaggacgtggtgatggtaccaaacattgtgtatactgacgcctgg
acagatcagatcagccaccgcctcaccctctcctggcagggggaggaggtgtggcgggca
tggtgggaggaccagctggggctcaacagggaggagaaggtggaggctctgaggaggaag
aggaggagggagaaggaggcgaagagagcctccggtcgacgcctggaactgtctgggagc
ttcacctcgtccgtcagctaccagtcagagctgaacgacttctctgattcgacgggctgg
tcctctgcggtgagccagggggcgtggtcagacacagaaggtaagctgtctcaggtggat
ggctttttggagagtgggacgccaagagccacaacaccctccaccctgcagactgacact
ccagtccccagactgacccccacacctgttaaagacaaactaagggaccagcagactccc
agcagcttccgcaccctcgccctgacccagacaccaagacttgatccgacaccagccagt
cagaggaggagcagacgtccagctgaggactacctccactctctgtttgcaccacaggat
gagccctcgcagcatgacggttacttcctggaagagggcagcgccatgcaccatccacct
ccacctctgtccttgtcctcctctcagctccgcagctcccagtccgtctctcagaggagc
ctcaggatggatccgtcccaggactcctccgtctggacgagtttctcccagtctcagtcc
ctcctgcagggttcacagggtcgacgggcgctgacacagggatcacagggatcgcagccc
aagaagaagaagtcgcgaatgggattttga
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