Epinephelus lanceolatus (giant grouper): 117269415
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Entry
117269415 CDS
T07331
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ely03041
]
117269415
Enzymes [BR:
ely01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117269415
Spliceosome [BR:
ely03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117269415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
OB_NTP_bind
R3H
DEAD
HA2_N
Ank_2
AAA_19
Ank_5
ATPase
Ank
Ank_4
nSTAND3
Ank_3
PhoH
AAA_22
AAA_30
TsaE
T2SSE
Motif
Other DBs
NCBI-GeneID:
117269415
NCBI-ProteinID:
XP_033502301
LinkDB
All DBs
Position
17:41984534..42152688
Genome browser
AA seq
1405 aa
AA seq
DB search
MKRRSCKYIMSKSGTASHKPAKSKNTPPCGSISSILKGTHIDEEVKIAVNLCLERFRYSD
ENEMEFPSSFTSTERAFVHRLAQSLGYISKSKGKEPHRFLTIRKKNGLEKPRPTMLLTVS
HNSSYFIRSLLQRFPTNKERIDMQPYIRSGMSVAAKPDNSYDKNKASGRLNNGIPMVPRR
RNPSELDSFRCSLPVHERQEEIIQLIRENRVVLVEGETGSGKTTQIPQFLLDECSRTGEP
CRIFCTQPRRLAAIAVAERVAAERGESVGQTVGYHIRLESRVSPKTLLTFCTSGVFLRTL
MAGDSSLTTVTHVIVDEVHERDGLTDFLLTKMRDVLQKIPTLKLILSSAALDTDLFLQYF
GSCPVIHLKGRQFEVKEVFLEDILRLTGFNKDMRKFKEETQRKEKKQKCLMEWCMAVEHS
SVEETPRTPVSAPGVLQDGSSLDRGDRTFNKLNENDTEHLEPWLRKEMDSSISSVFLSED
QVAFIQLFNLIVYEGVNVDYRHSETGATPLMVAAGRGFLTQMEQLLNMGADINMKASNGW
TALDFAKHFQQTEAMDLLQSSIPLGEVSSLEESTLVQCGSAELSTEEQELLKLYHHSFDD
DHVDLDLIMDVLHNICSTTTDGAVLIFLPGYDEIVALRDRILYDDKRFSTISERYQVFTL
HSDMQTLDQKKAMKPSPPGVRKIILSTNIAETSITINDVVFVIDSGKVKEKSFDTLSRVS
MLKRVWISKASALQRKGRAGRCQSGICFHLFSRLRFNNMQEFQVPQLLRMPLQELCLQTK
LLAPSYCPVAEFLSKAPQPPAGHAIRSAVQMLKTIDAMDQYEDLTDLGYHLADLPVEPHL
GKMVLCAVVLKCLDPILTIACTLAYRDPFVLPAQGSQKKAALLCRKWFTSNTLSDHMALL
RAFQAWQKARSDGWERTFCEKNFLSQATMDMILGMRTQLLGQLRAIGFVRARGGSDIRDV
NLNSENWAVVKAALVAGMYPNLVHVNQESSLLSSNREKKVHFHPTSILTHFKENSPAKLA
QALPTDWLIYDEMSRGHRMATVRCCSVVTPITVAIFTGGAIQPSSALQEPAVQKAKDSLL
VDTSDSETEDLAEMRVDDWLIFQLDREAAGLVCELRQKWQSLFIKRIRCPSKPCSQQDEA
ILRTLVSVLAAEEQEAGLQQPTGIGQRPRPMSSEDGSQASVKNSKHSTQLHTNTTDDRPC
RMPATPNLQQKKASSRDETSLPINQLSDDPHSSSSVTLDNPSDSPCLSSSGKILKSLFPQ
WAVLSVRYFIMKSSNVRNIDISQQKGIWSTTPSNENKLTKAFMENNLIILIFSVQGSGHF
QGYARMTSAVSQESCQDWGFMGLGGVFSVEWIHKESLPFHCTQHILNPWNDNKKVQISRD
GQELEPQAGSQLLSLWERNPRNQVK
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtcgaagctgtaagtacatcatgtcgaaatctggtacagcatcacataaacca
gccaagagcaagaacacaccaccctgtggttcaatctccagcatccttaaaggaactcac
atcgatgaagaagtcaagatagcagtgaacctctgtctggagaggtttcgctacagtgac
gaaaatgagatggaatttccctcctcctttaccagtactgagagggctttcgttcatcga
ctggcacagtccctgggttacatttctaagagcaaaggaaaagaaccacatcgtttcctc
accatcaggaagaagaatggtttagagaaacctcggccaaccatgcttctcacggtctcc
cacaattcctcatatttcattcgcagcttacttcagaggtttcccaccaataaggaacgt
atagacatgcagccctacatcagaagtggtatgtctgtggctgctaaacctgataatagt
tatgacaagaacaaggcaagcgggcgcttaaacaatggcatacccatggtgcctcggagg
aggaatccgtcagaactggacagttttcgatgctctctgcctgtgcatgaacgccaggag
gagatcatccagctcatcagagaaaacagggtggtgctggtagagggagagaccggttct
ggaaaaactacacagatcccacagttcctgctagatgagtgcagcaggactggagaaccc
tgcaggatcttctgcactcagcccagacgcctggctgccattgctgtggctgagagagtg
gcagctgagagaggagagagcgtgggccagactgtcggttatcacatcagactagagagc
agggtctcccccaagacactgctgaccttttgcaccagtggagtgttcctcagaacattg
atggctggagatagcagcctgacaactgtcacacatgtaatagtggatgaggtgcatgag
cgtgatggtctgactgacttcctgctcactaagatgcgggatgtgcttcagaagatcccc
acactgaaactgatcctctccagtgcggctctggatacagacctgttccttcaatacttt
ggctcctgccctgtcatccacctcaaaggaagacagtttgaagtgaaggaagtctttctg
gaggacattctgaggctgactggctttaataaggacatgagaaaattcaaggaagagaca
cagagaaaggagaagaagcagaaatgtttgatggagtggtgtatggcagtagagcacagt
tctgttgaggagacaccgaggactcctgtgtctgccccaggcgtcctccaggacggcagc
tccttggacagaggggaccgcactttcaacaagctgaatgagaatgatacagaacatctg
gagccatggctgcggaaggagatggactcaagcatttccagtgttttcctcagtgaagac
caggttgctttcattcagctcttcaacctcatcgtctatgaaggtgttaacgtggactac
aggcacagtgagacaggggccacgcctctgatggtggcagcaggtcgagggttcctcact
cagatggagcagctgctcaacatgggggcagacatcaacatgaaggcctccaacgggtgg
acagccttagactttgccaaacacttccagcagacagaagctatggatctactccagtca
tcaattcccctgggagaggtgagcagcctggaagagtccactctggtgcagtgtggcagt
gcagagctgagcactgaggaacaggagctgctcaaactgtaccaccacagctttgatgat
gaccatgtggacctggacctcatcatggatgtgctgcacaacatctgctccaccaccact
gatggtgctgtcctgattttccttcctggatacgatgagatagtggcactcagggaccgc
atcctgtatgacgataagagattctccaccatctctgagagataccaggtgttcactcta
cattcagacatgcagactctggatcagaagaaagccatgaagccctctccacctggtgtc
cggaagataattctttcaaccaacattgctgagacaagcatcaccatcaacgatgtggtc
tttgtcattgattcaggaaaggtcaaagagaagtcctttgataccctcagtcgtgtatcc
atgttaaagagagtttggatctcgaaagccagtgctctgcaaaggaagggaagagctggg
cgatgccaatcagggatatgctttcacctcttcagtcgactcaggttcaacaatatgcag
gaatttcaggttccacagctgttgcggatgcctctgcaggaactgtgtctgcaaaccaaa
ctgctggccccctcgtactgtccagtagctgagttcctgtccaaagctccacaacctcct
gctggacatgccatcaggagtgctgtgcagatgctaaagacaatagatgctatggaccag
tatgaagacctgacagatctgggctatcacctggccgacctgcctgtggagccccacctg
ggcaagatggtgctgtgtgctgtggtgctcaagtgtttggaccccattctaaccattgcc
tgtacactggcctatcgcgaccccttcgtccttcctgcccagggctctcagaaaaaagct
gctctactctgccgcaaatggtttacctctaacaccctcagtgaccacatggccctgctg
agagccttccaggcatggcagaaggcccgcagtgacggctgggagagaaccttctgtgag
aagaacttcctgtcccaggccaccatggacatgatacttggaatgcggacacagctgctg
ggacagctccgtgccattggttttgtgcgagcccgtgggggcagtgacatccgcgatgtg
aatctgaactctgaaaactgggctgtggtgaaagcagccctggtggctggcatgtatcca
aacctggtccatgtcaaccaggagtcctccttgctctctagtaacagggagaagaaggtc
cactttcatcccacatcaatcctgacccatttcaaggagaacagcccagccaaattggcc
caggcccttcccacagactggttgatctacgatgagatgagccgaggtcacaggatggcc
actgtccgctgttgctccgtggtgactcccatcaccgtggccatatttacaggcggtgca
atacaacccagctctgccctgcaggaacctgctgtacagaaagctaaagacagtctgctt
gttgacaccagtgacagtgagacagaggacctagctgaaatgagagttgatgattggctc
atcttccagttggacagagaggctgcaggactggtgtgtgaattgaggcagaagtggcag
agtttgttcatcaagaggatccgttgtccttcaaaaccctgttctcaacaagacgaggcc
atcctacggaccctggtttctgttcttgcagcagaggagcaggaagcaggcctgcagcag
cccacaggcattggccagcggcctcggcccatgtcatcagaggatggctcccaggcttct
gttaagaactccaagcacagcacccaactacacaccaacaccaccgatgacaggccttgt
aggatgccagcaaccccaaatctgcaacagaagaaagccagcagtagagatgaaacctca
ctgcccataaatcagctctcagatgaccctcactcctccagctctgtgaccttggacaat
ccctctgacagcccgtgtctgtcctcctcaggaaagatcctaaagtcactgttccctcag
tgggctgttttatcagtgcggtacttcatcatgaagagcagcaatgtcaggaacatagac
atttctcagcagaaagggatctggtccaccacaccaagcaatgagaacaaactcaccaag
gccttcatggagaataacctcatcatcctcatcttctctgttcagggctctggacacttc
cagggctatgctcgcatgacatcagctgtcagtcaggagagctgccaggactggggcttc
atgggactaggaggagttttcagtgtagagtggatccacaaggaaagtcttcccttccac
tgcacccaacacatcctcaacccatggaacgacaacaagaaggtccagatcagcagagat
ggacaggagttagagccccaggcaggcagccaacttttgtcactatgggagagaaaccca
aggaaccaagtgaagtaa
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