Epinephelus lanceolatus (giant grouper): 117269807
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Entry
117269807 CDS
T07331
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ely03009
]
117269807 (ddx55)
Enzymes [BR:
ely01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117269807 (ddx55)
Ribosome biogenesis [BR:
ely03009
]
Eukaryotic type
Pre-60S particles
Helicases
117269807 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Cas3-like_C_2
Helicase_C_2
SBF_like
YbjM
Transformer
Motif
Other DBs
NCBI-GeneID:
117269807
NCBI-ProteinID:
XP_033503029
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All DBs
Position
17:3420140..3427772
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AA seq
599 aa
AA seq
DB search
MENTTDGTWDSLPVKLNDGILQTLREVKFPYMTPVQSACIPLFMSNKDVAAEAVTGRGKT
LAFVIPIIELLLKREEKLKKMQVGALVITPTRELALQISEVMEQFLQKFPQFTQILLIGG
SNPIEDVEKFKEKGANIVIATPGRLEDMFRRKSDGLDLASSVKSLDVLVLDEADRLLDMG
FEASLNTILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAATAVQKTPS
RLSNYYTMCRSEDKFNNLVAFLRQRKQEKHLVFFSTCACVEYYGRALETLIKKVTVCCIH
GKMKNKRNKIFADFRALKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASAFVHRCGRTA
RIGNQGNALVFLLPMEESYVSFLSINQKCPLEKMVLTGEVVDVLPKVQAMALADRAMFDR
GMRAFVSYVQAYAKHECSLIFRIKDLDFASLARGFALLRLPKMPELRGKKFPDFIETTVD
TETIRYKDKHREKQRQKMLAELKEQDKTPLPRKTFVKNKAWSKQKLKKERRRKRSAKRKH
EEGSDVDDEDMKELLNDTRLLKKLKKGQISEEDFEKQITSGPKYKTEGLSLDGSGDEEV
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggagaacacgacagacggcacgtgggacagtttacctgtcaaactaaacgacgggatt
ttacagacgctccgggaagtgaagttcccgtacatgacacctgttcagtctgcctgtatc
ccgctgttcatgagcaacaaagatgtggctgctgaggcggtgactggcagaggaaagacg
ctcgcttttgtgattcccatcatcgagctgctgctcaagagagaagagaagctgaagaag
atgcaggttggagccctggtgatcactcccacaagagaactggctcttcagatcagtgaa
gtgatggagcagttcctgcagaagtttccacagtttacgcagattttactgatcggtggc
agcaaccccatagaggatgtggagaagttcaaagaaaaaggggccaacattgtgattgcg
acaccggggcgtctggaggacatgttcaggaggaagtcagacggtctggacttggcgagc
tcagtcaagagtctcgatgtgctggtcctcgatgaggctgacagactgctggacatgggc
ttcgaggccagtctgaacaccatcctgggctacctccccaaacagaggcgcacaggcctg
ttttcagccactcagactcaggagctggagaagctggtgagggccggcctcaggaaccct
gtacgcatcactgtcaaagagaaaggcgtcgctgccaccgccgtccagaagactccctcc
agactctccaactactacactatgtgtcgatcagaggataagttcaacaacctggtggcg
tttctacggcaacgcaagcaggagaagcatctggtcttcttcagtacgtgtgcgtgtgtg
gagtactacggtcgagctctggagactctgatcaagaaggtcaccgtctgctgcatccac
ggcaagatgaagaacaaacgcaacaagatctttgcagacttcagggccctgaaaagtggg
atcttggtgtgcacagacgtcatggccagaggtattgatatccctgatgtgaactgggtg
ctgcagtacgatcctcccagcagtgccagtgccttcgtacatcgatgtggacgcacagca
cgaatcggcaatcagggcaacgctcttgtcttcctgctgccgatggaggagtcctacgtc
agctttctgtccatcaaccagaaatgcccactggagaagatggtcctcacaggtgaagtc
gtggacgtgctgcccaaagtgcaggccatggctctggcagaccgagccatgtttgacaga
ggcatgagagccttcgtgtcgtatgtccaggcctacgccaaacacgagtgcagcctcatc
ttcaggatcaaagatctggactttgcgtccttggcccgcggcttcgccctcctgcgcctg
ccgaagatgcccgagctgagggggaaaaagttccctgatttcatcgagacgacggtggac
acagaaaccatccgctacaaggacaagcacagggagaaacagaggcagaagatgctggcc
gagctgaaagaacaagacaagacgcccttacccagaaagaccttcgtcaagaacaaggcc
tggtccaagcagaagctcaagaaggagcgcaggaggaagaggtcggccaagaggaagcac
gaagagggctctgatgtggacgacgaggacatgaaggagcttttaaatgacactcgcctc
ctcaagaaactaaagaaggggcagatcagcgaggaggactttgagaaacagataacgagt
ggaccaaaatacaaaacagaagggctgtcgctggacggctcgggggacgaagaggtgtga
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