Epinephelus lanceolatus (giant grouper): 117270805
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Entry
117270805 CDS
T07331
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117270805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ely03021
]
117270805
03019 Messenger RNA biogenesis [BR:
ely03019
]
117270805
Transcription machinery [BR:
ely03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117270805
Messenger RNA biogenesis [BR:
ely03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117270805
U7-dependent histone pre-mRNA processing factors
117270805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
117270805
NCBI-ProteinID:
XP_033504590
LinkDB
All DBs
Position
18:10586873..10599136
Genome browser
AA seq
686 aa
AA seq
DB search
MAAKRKSDTTVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PFIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYSETDLEESMEKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPRVVMASPGMMQSGLSRELFESWCTDRRNGVI
IAGYCVEGTLAKHIMTEPDEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVDIEVHNPRNTEAVTLTFRGEKLAKVMGSLTDR
KCVQGQRVSGILVKRNFNYHIVSPSDLSNYTDLCMSTVTQTQAIPYTGPISLLVSQLRSL
AGDVEQVEGAEKITVRIFKSITLVHEAGMVLLEWIANPLNDMYADAVTTVILEVQSNPNA
QKLLDSKREAFDMDVFVERLGLMLHDMFGDDCVNFTDGKNLSVTVDGVTASIDPETRTVT
CTEDETLREMVEVAVHRLHDALSPAF
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaaacgtaaatctgacacgacggttcccgcggaggaaagtgaccaactgctc
atccgcccgctaggagcaggacaggaggtgggacgatcctgcatcatcctggagttcaag
ggacgaaagattatgttggactgtgggatccatcctggtctggagggaatggatgctctg
ccgttcattgacctgatcgatccggccgagatcgacctgctgctcatcagccacttccac
ctggatcactgtggcgctttgccctggttcctacagaagaccagctttaaaggacgcact
ttcatgacgcacgccaccaaggccatctaccgctggctgctgtccgactacgtcaaagtc
agtaacatctcggcagacgacatgctgtactcagagacagacctggaggagagcatggag
aagatcgagaccatcaacttccacgaggtgaaggaagtagccggcatcaagttctggtgt
taccacgccggccacgtcctcggagccgccatgttcatgatcgagatcgccggagtcaag
ctgttgtacacaggagatttctctcgtcaggaggatcgacatctgatggcagcagagatc
cccagcgtcaaaccagacatcctcatcactgagtcgacgtacgggactcacatccacgag
aagcgcgaggagagggaagctcgcttctgtaacacggtccacgacatcgtgaacagggag
ggtcgctgtctgatccccgtcttcgctctgggtcgagctcaagagctgttgctcattctg
gatgagtactggcagaaccacccagagctccacgacatccccatctactacgcctcatct
ctggccaggaaatgcatggcggtgtaccagacctacatcaacgccatgaacgacaagatc
cgcaaggccatcaacatcaacaaccccttcgtcttcaagcacatcagcaacctcaagagc
atggatcactttgacgacatcggccccagagtggtgatggcgtcccctggtatgatgcag
agtggcctgtccagagagctgtttgagagctggtgcaccgacaggaggaacggagtcatc
atcgccgggtactgtgtggagggaacgctcgccaagcacatcatgacggagccagacgaa
atcgccaccatgtcgggtcagaagcttcctctgaagatgtctgtggactacatctccttc
tctgctcacactgactaccagcagaccagcgagttcatcagggcgctcaaacctcctcac
gtgattttggtccacggcgagcagaacgagatggcccgtctgaaagcggctctgatccgc
gagtacgaagacaacgacgaggtcgacattgaagtccacaacccgcgaaacacagaagca
gtcacactcaccttcagaggagagaagctggcaaaggtgatgggctctctgactgacagg
aagtgtgtccagggtcagagggtctccgggatcctcgtcaagagaaacttcaactatcac
atcgtgtcaccctccgacctctccaactacacagatctgtgtatgagcacagtgacacag
actcaggccatcccgtacaccggccccatctcactgctggtcagtcagctgcgcagcctc
gcaggagacgtagagcaggtggagggagcggagaagatcaccgtcaggatctttaagagc
atcactctggttcatgaagctggcatggtgctgctggagtggattgccaacccactcaac
gatatgtatgccgacgccgtcaccacagtgatcctggaggtccagtccaacccaaacgcc
cagaaacttctggactcgaagagagaagcgttcgacatggacgtgtttgtggagagactc
gggctcatgctgcacgacatgttcggagacgactgcgtcaacttcacagacggtaaaaac
ctgagtgtgactgtggacggagtcacagcgtccatcgaccccgaaaccagaacggtgacg
tgtactgaggatgagactctgagggagatggtggaggtcgccgtccaccgtctccacgat
gccctcagccccgccttctga
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