Epinephelus lanceolatus (giant grouper): 117271874
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Entry
117271874 CDS
T07331
Symbol
col6a2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely04510
Focal adhesion
ely04512
ECM-receptor interaction
ely04518
Integrin signaling
ely04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117271874 (col6a2)
04518 Integrin signaling
117271874 (col6a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117271874 (col6a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117271874 (col6a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ely04147
]
117271874 (col6a2)
00536 Glycosaminoglycan binding proteins [BR:
ely00536
]
117271874 (col6a2)
Exosome [BR:
ely04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117271874 (col6a2)
Glycosaminoglycan binding proteins [BR:
ely00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117271874 (col6a2)
Hyaluronan
Extracellular matrix or blood plasma proteins
117271874 (col6a2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Motif
Other DBs
NCBI-GeneID:
117271874
NCBI-ProteinID:
XP_033506274
LinkDB
All DBs
Position
12:23220503..23248327
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AA seq
1011 aa
AA seq
DB search
MLGLEVAALCLLLGALTHGQPTGCSKTNECAIDVYFTIDTSETIALQEPPPGALVEGIKK
FTEEFAQRFQDEELRGVVKVSWNIGGLHYSQRQEVFSPIAPRDDFISAVRRIKYLGKGTY
TDCAILKMVEEIRGSPNKGALRFAVIITDGHVTGNPCGGIKVAAEKARDEGIRLFVVAAS
NNIDETGLREIANSPAMVYRSEFMAVDLSSGRPVTHMDTINNITKTMKHLAYVECYKVSC
LETPGPRGPKGHRGQKGAKGDNGDPGLKGDRGRPGDPGIEGPIGQPGTKGEAGSKGDKGE
MGTQGKKGVAGIPGRNGTDGQKGKIGRIGAPGCKGDPGDRGPDGHPGDVGERGFPGTDGE
KGDPGRPGRPGPSGPPGEAGPKGERGSPGSPGVPGLKGNPGVPGLAGSRGEPGRRGDYGP
KGAQGPDGVKGDKGEMGPEGSRGLPGEEGQPGAKGDNGLPGPRGPPGTAGEPGKNGTRGD
PGDAGPRGESGPPGPKGDPGRPGFSYPGPRGEPGGRGDGGSRGPRGSRGDCGQKGEPGDQ
GTPGEPGEPGAQGEPGLRGPRGELGRDGDPGPEGDPGLTECDVMNYIRETCGCCDCEKRC
GAVDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSLAKDPEAITGTRVGVVQYSHSGTF
QAIRLNDPKIDTLSAFKDAVKRLEWIAGGTWTPSALKYAYDNLIRDGRRAKAKVNVVVIT
DGRFDPRDDDSLLTYLCSDSSVDVSAIGIGDMFDQAEENESLKSIACQKDGRVLGMKRFA
DLVADEFIDKIETVLCPDPVIVCPDLPCKSEPAVASCVQRPVDVVFLLDGSERMGLENHR
MAKEFIANVASRLTLASGPDDKRNARFALLQYGTPSEQRVEFKLTGNLSVISDSLAAMNY
LDSSSYLGSAIIHAVNNLVVPEVRANQARRHAERAFVFITDGITSTDQLSEGVEAMKRAQ
GVPTVIAMGTETDEEVLKKVSLEDSSAIFRGVDYTMLNKASFFERFIRWIC
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgctggggttagaggtcgccgcgctctgtcttcttttaggagccctgacccatggccag
ccaacaggttgcagcaagacgaatgaatgtgccatagatgtgtacttcaccatagacaca
tctgagaccatcgccctgcaggagccgcctcctggagcgctggtggaaggcatcaagaag
ttcaccgaggagtttgcacagcgttttcaagacgaagaactcagaggtgttgtgaaggtc
agctggaacatcggtggactgcactactcccagagacaggaagtgttcagtcccatcgca
cccagggatgacttcatcagtgccgtcagaagaatcaaatacctgggtaagggcacctac
accgactgcgccatcttaaagatggtcgaggaaataaggggctcacccaacaaaggtgcc
ctgcgcttcgctgtgatcatcaccgatggccatgtgactggaaacccatgcggaggcatc
aaagtggcagcagagaaggctcgcgacgagggcattcggttgtttgtcgtggcggcatcg
aataacatcgatgagacagggctgagggagatcgccaactctccagcaatggtctacaga
agtgaattcatggctgtggatctgagctcaggcagaccagtgacacatatggacaccatc
aataacatcaccaaaacaatgaaacatttagcatatgtagagtgttacaaagtgtcctgt
ctggagacgccagggccccgcggtccaaaaggccacagaggacaaaaaggagccaaagga
gacaacggcgacccaggtctgaaaggagatagaggtcgcccaggagaccccggtatcgag
ggtcccatcggtcagcctggtaccaaaggagaagcaggttccaaaggcgataagggagag
atgggaactcaggggaaaaagggtgtggctggtatcccaggacgtaatggtacagatgga
cagaagggtaaaatcggacggatcggcgctcccggctgcaaaggagacccaggcgacaga
ggtcctgatggtcaccccggagatgtcggtgaacgtggtttccctggaactgatggagaa
aagggtgatcccggtcgccctggaagacctggtccctctggcccgcctggagaggctgga
ccaaagggagagaggggaagtcctggatcacctggtgtccctggactgaaaggaaacccc
ggggtccctggacttgcaggatctagaggagagccggggagaagaggagactatgggcca
aagggtgctcaagggccagacggagttaaaggagacaagggtgaaatgggaccagaaggc
tcaagaggacttccaggagaagaaggacaaccaggcgcaaagggagacaatgggctgcca
ggccccaggggaccaccggggacagcaggagagcctggaaaaaatggcaccagaggtgac
cctggtgatgctggacctagaggagaatctggaccacctggaccaaagggagaccccgga
agacctggcttcagctatcctgggccaagaggagaaccgggtggcagaggagatggcggc
agccgtggacctcgtggcagcagaggagactgtggtcaaaagggtgaaccaggagaccaa
ggaactcccggagagccaggtgagccaggtgctcagggtgaacctggtctaagagggccc
agaggagagcttgggcgtgatggagatcctggtcctgagggagatcccggcctcactgaa
tgtgatgttatgaactacatcagggaaacctgtggctgctgtgactgtgagaaacgctgc
ggagccgtggacattgtgtttgtgattgacagctcagagtcagtgggtctgactaacttc
accctggagaagaactttgtcatcaacaccatcaacagactgggatcccttgctaaagac
cctgaggcaatcacaggaacaagagtgggagttgttcagtacagtcacagtggaaccttc
caagccatccggctcaacgaccccaagatcgacacattgtctgccttcaaggatgcagtg
aagcgcttggagtggatcgctggaggaacatggactccatctgctctgaagtacgcctac
gacaacctgatcagggacggccgcagagccaaggccaaagtcaatgtggttgtcatcaca
gatggacgcttcgaccccagagatgatgactcgctgctcacctacctctgcagtgattcc
agtgttgacgtgagtgccatcggtatcggagacatgtttgaccaagctgaggagaatgag
agtctgaagagcatcgcctgccagaaggatggcagggtgcttggcatgaagcgttttgca
gacctggtagctgatgagttcatcgacaagattgaaacagtgctctgcccagatcctgtc
atcgtatgccctgatctcccttgtaaatcagagcctgcagtggctagctgtgttcagcgg
ccagtggatgtggtgttcctgttggatggttctgagaggatgggactggagaaccatcgc
atggccaaagagttcatcgcaaacgtggccagtcgcctcaccctggccagtggcccagat
gacaagaggaatgcccgctttgccctgctgcagtacggcacaccttcagagcagcgagtg
gagttcaagctcacaggcaatctctcagtgatctctgattcactggcagcgatgaactac
ctggactcctcctcttatctgggcagcgctatcatccatgctgtcaacaacctggtggtt
ccagaggttagagcaaaccaggctcgtcgccacgctgagcgtgcctttgtgttcatcacc
gatggcatcacaagcactgaccagctgagtgagggcgtggaggccatgaagcgagcccaa
ggtgttcccacggtgatcgccatgggaacagagacggatgaagaggtgctgaagaaggtg
tcgctagaggactcgtcggccatctttagaggagttgactacaccatgctgaacaaagcc
tcgttctttgagcgctttatccgctggatatgctag
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