Epinephelus lanceolatus (giant grouper): 117272119
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Entry
117272119 CDS
T07331
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely03013
Nucleocytoplasmic transport
ely03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117272119
03015 mRNA surveillance pathway
117272119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ely03019
]
117272119
Enzymes [BR:
ely01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117272119
5.6.2.5 RNA 5'-3' helicase
117272119
Messenger RNA biogenesis [BR:
ely03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117272119
mRNA cycle factors
Common to processing body (P body) and stress granule
117272119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
NPHP3_N
SLFN-g3_helicase
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
SRP54
AAA_16
UvrD_C_2
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
117272119
NCBI-ProteinID:
XP_033506764
LinkDB
All DBs
Position
19:complement(12410072..12445680)
Genome browser
AA seq
1956 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPVNGPDGVLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPIHACSYCGIHDPACV
VYCNTSKKWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLL
GFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRA
RQITAQQINKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEA
DYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPW
KGIGHVIKVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDE
TSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDS
PVSFLALHNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS
KPRKLVNTINPGGRFMSTAMYDAREALIPGSVYDRSSNGRSSNMYFQTHDQIGMIGTGPS
PMTSLNIPIPFNLVMPPIPPPGYMGQVNGPSAGRGGGMKGKAGSGGGGGTRGGRQRNRGN
MGNHSGGDRHGGHMSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDS
YLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
5871 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctaacgttcctcgacaccgaggaa
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgatttcaccctg
ccgagccagacccagacccaaggccagacccagagccagctagacaaccaggttaatggc
cctgacggcgtgctacagaatggagacgaccctgtggtaaaagccagtcagctgcttgca
gagttgaactttgaggaggatgaggaggacacctattacaccaaggatctcccgatacat
gcctgcagttattgtggtattcatgatccagcctgtgtggtctactgcaacacgagcaag
aagtggttttgcaatggccgtggaaacacatccggcagccacattgtaaaccacctggtg
agagcaaagtccaaggaggtgaccctgcataaagatggccccctgggggaaacagtgctg
gagtgctacaactgtggctgtcgcaatgtcttccttctgggcttcatccctgctaaagct
gactcagtagtggtgttactgtgcaggcagccatgtgccagccagagcagcctgaaagac
atcaactgggacagctcacagtggcagcctctcatccaggaccgctgcttcctgtcctgg
ctggtgaaaatcccgtcagagcaggagcagctgagggctcgtcagatcaccgcccagcag
atcaacaagctggaggagctctggaaggagaatcccactgcgaccctggaggacctggag
aagcccggtgtggatgaggagccccaacatgtgctgctccgctatgaggatgcctaccag
taccagaacatctttggtcctctggtgaaactggaggctgactacgataagaaactcaaa
gagtctcagactcaagacaatatcacagtcagatgggacttgggcttgaataaaaagagg
attgcttatttcactcttcccaagacagactcagacatgcgtctcatgcagggagatgaa
atttgtctgcggtacaaaggagacctggcccctccatggaaaggcattggacatgtcatc
aaagtccctgataactatggtgatgagattgccatagagctgaggagcagcgccggagct
ccggtggagatcccacacaactttcaggtcgactttgtgtggaagtccacttcctttgac
aggatgcagagtgccctgaagacgtttgccgtggacgagacctcagtgtctggttacatc
taccataaactgctgggacatgaggtagaggatgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgctcaaggcctgcctgaccttaaccactcacaggtgtatgctgtgaagacg
gtgctgcagcgtcccctcagtctgatccagggtcctccgggcacagggaagacagtaacc
tctgcgaccattgtctaccacctggctagacagggcaacgggccagtgctggtgtgcgca
cccagcaacatcgccgtcgaccagctgacagagaagatccaccagacaggcctcaaggtg
gtgaggctgtgcgccaagagcagggaggccatagactcgcctgtgtccttcctggctctg
cacaaccagactcgtaacatggacagtatgccagaacttcagaagcttcagcagctgaag
gacgagactggagagctgtcctcctcagatgagaagcgctacagagctctgagacgcacc
gctgagagggagctgcttatgaatgctgacgtgatctgctgtacctgtgtcggggcgggc
gatcctcgtctggccaagatgcagttccgctcaatcctgattgatgagagcacccaggcc
accgaaccagagtgcatggtgcctgtcgtcctgggggccaaacagttgattctggtgggt
gatcactgccagctgggccctgtggtgatgtgtaagaaggcagctaaagcaggcctgtcc
cagtctctgtttgagcgtctggtagttttggggatccggccaatccgtctgcaggttcag
taccgtatgcacccggctctcagcgccttcccctccaacatcttctatgagggctctctg
cagaacggagtcactgcagcggaccgcgtgaagaaaggttttgacttccagtggccacag
cctgacaagccgatgttcttttacgtcacccagggccaagaggaaatagcaagctctggg
acatcctatctcaacaggactgaggcagccaatgtggagaaaataaccacaaggttgcta
aaggccggagcgaaacctgatcagattggcatcattacgccctatgagggacagcggtcc
tacctggtccagtacatgcagttcagcggctccctccacaccaaactctaccaggaggtt
gaaatagccagtgtggacgcctttcaaggcagagagaaggacttcatcatcctgtcctgt
gtgagggccaatgagcaccagggaatcggcttcctcaatgatcccagacgtctcaatgtg
gcactcacgagggccaggtatggtgtgataattgtgggaaaccctaaggccctgtccaag
cagcctctgtggaaccacctgttgaactactacaaggagcagaaggtcctggttgaaggc
cccctgaacaacctgagagagagcctcatgcaattcagcaagccacgcaagcttgtcaac
accatcaaccctgttaatggccctgacggcgtgctacagaatggagacgaccctgtggta
aaagccagtcagctgcttgcagagttgaactttgaggaggatgaggaggacacctattac
accaaggatctcccgatacatgcctgcagttattgtggtattcatgatccagcctgtgtg
gtctactgcaacacgagcaagaagtggttttgcaatggccgtggaaacacatccggcagc
cacattgtaaaccacctggtgagagcaaagtccaaggaggtgaccctgcataaagatggc
cccctgggggaaacagtgctggagtgctacaactgtggctgtcgcaatgtcttccttctg
ggcttcatccctgctaaagctgactcagtagtggtgttactgtgcaggcagccatgtgcc
agccagagcagcctgaaagacatcaactgggacagctcacagtggcagcctctcatccag
gaccgctgcttcctgtcctggctggtgaaaatcccgtcagagcaggagcagctgagggct
cgtcagatcaccgcccagcagatcaacaagctggaggagctctggaaggagaatcccact
gcgaccctggaggacctggagaagcccggtgtggatgaggagccccaacatgtgctgctc
cgctatgaggatgcctaccagtaccagaacatctttggtcctctggtgaaactggaggct
gactacgataagaaactcaaagagtctcagactcaagacaatatcacagtcagatgggac
ttgggcttgaataaaaagaggattgcttatttcactcttcccaagacagactcagacatg
cgtctcatgcagggagatgaaatttgtctgcggtacaaaggagacctggcccctccatgg
aaaggcattggacatgtcatcaaagtccctgataactatggtgatgagattgccatagag
ctgaggagcagcgccggagctccggtggagatcccacacaactttcaggtcgactttgtg
tggaagtccacttcctttgacaggatgcagagtgccctgaagacgtttgccgtggacgag
acctcagtgtctggttacatctaccataaactgctgggacatgaggtagaggatgtggtc
atcaagtgtcagctgcccaaacgcttcaccgctcaaggcctgcctgaccttaaccactca
caggtgtatgctgtgaagacggtgctgcagcgtcccctcagtctgatccagggtcctccg
ggcacagggaagacagtaacctctgcgaccattgtctaccacctggctagacagggcaac
gggccagtgctggtgtgcgcacccagcaacatcgccgtcgaccagctgacagagaagatc
caccagacaggcctcaaggtggtgaggctgtgcgccaagagcagggaggccatagactcg
cctgtgtccttcctggctctgcacaaccagactcgtaacatggacagtatgccagaactt
cagaagcttcagcagctgaaggacgagactggagagctgtcctcctcagatgagaagcgc
tacagagctctgagacgcaccgctgagagggagctgcttatgaatgctgacgtgatctgc
tgtacctgtgtcggggcgggcgatcctcgtctggccaagatgcagttccgctcaatcctg
attgatgagagcacccaggccaccgaaccagagtgcatggtgcctgtcgtcctgggggcc
aaacagttgattctggtgggtgatcactgccagctgggccctgtggtgatgtgtaagaag
gcagctaaagcaggcctgtcccagtctctgtttgagcgtctggtagttttggggatccgg
ccaatccgtctgcaggttcagtaccgtatgcacccggctctcagcgccttcccctccaac
atcttctatgagggctctctgcagaacggagtcactgcagcggaccgcgtgaagaaaggt
tttgacttccagtggccacagcctgacaagccgatgttcttttacgtcacccagggccaa
gaggaaatagcaagctctgggacatcctatctcaacaggactgaggcagccaatgtggag
aaaataaccacaaggttgctaaaggccggagcgaaacctgatcagattggcatcattacg
ccctatgagggacagcggtcctacctggtccagtacatgcagttcagcggctccctccac
accaaactctaccaggaggttgaaatagccagtgtggacgcctttcaaggcagagagaag
gacttcatcatcctgtcctgtgtgagggccaatgagcaccagggaatcggcttcctcaat
gatcccagacgtctcaatgtggcactcacgagggccaggtatggtgtgataattgtggga
aaccctaaggccctgtccaagcagcctctgtggaaccacctgttgaactactacaaggag
cagaaggtcctggttgaaggccccctgaacaacctgagagagagcctcatgcaattcagc
aagccacgcaagcttgtcaacaccatcaaccctgggggtcgattcatgagcacagccatg
tatgatgccagggaggctctcattcctggatctgtttatgaccgcagcagcaacggccgt
tcatccaatatgtatttccaaacccatgatcagatcggtatgattggcacaggccccagt
cccatgacttccctgaacatccccatccccttcaacctcgtgatgccccccatacctcca
cctgggtacatgggacaggtcaatggaccctcagcaggtcgtggtggaggcatgaaaggc
aaggcaggcagtggaggaggcggcgggactcgaggtgggcgtcaaagaaaccgcggcaac
atggggaaccacagcggaggagaccggcatggaggccacatgagtggcagccaggccagc
caggacctgggctcccagcccttctcacaggggcctctgacgcagggctacatcaacatg
agccagccatctcagatgagccagcccgggctctcccagcctgaactctcacaggacagt
tacctaggagacgagttcaagtcccagattgatgtggctttgtcccaggactccacctac
cagggggagcgggcctaccagcacggtgtgactggactgtcccagtactag
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integrated database retrieval system
