Elizabethkingia sp. 2-6: FCS00_02950
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Entry
FCS00_02950 CDS
T06039
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
elz
Elizabethkingia sp. 2-6
Pathway
elz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCS00_02950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elz03019
]
FCS00_02950
Enzymes [BR:
elz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FCS00_02950
Messenger RNA biogenesis [BR:
elz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FCS00_02950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Cas3-like_C_2
UvrD-helicase
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
QCO45375
UniProt:
A0ABD6YKQ1
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All DBs
Position
complement(646165..647439)
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AA seq
424 aa
AA seq
DB search
MTFDDLKLIEPISKALQEEGYKTPTSIQEQAIPKILAGKDLLGCAQTGTGKTAAFAIPIL
QLLTERSENKHRKGVIKALILTPTRELAIQIEENFEAYGRHLPLKTMVIFGGVKQGAQEE
KLKRGVDILVATPGRLLDFISQGIITLKNLDIFVLDEADRMLDMGFVHDVKRILKHLPEK
RQNLFLSATMPKEIQKLASEILVNPVKVEVAPVSSTADTIDQSVFFVDKDDKINLLIHLL
QDQSLSPVIVFSRTKHGADKIAKKLNQSKISAEAIHGNKSQNARQNALNNFKSGKTRILV
ATDIAARGIDIDNLKYVVNFELSDVAETYVHRIGRTGRAGASGTSFSFVDGLDLVNLRNT
EKLIGKKIFVNKEHPFHTDNLVEQKRDSNNKPVSARPSNAGNNNNSSKRNVKSSKKPFFR
GKKK
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
ttgactttcgacgatttaaaattaatagaacctatttccaaagcattgcaggaagaaggt
tacaagactccgacctctattcaggagcaggcaataccgaaaattcttgccgggaaagat
ctattaggatgtgcacaaaccggtaccggaaaaacggccgcttttgctattcctatctta
cagcttcttacagaaagaagcgaaaataaacaccgtaaaggtgttataaaagcattgata
ttaacgcctacaagagagctggcaatacagatagaagaaaacttcgaagcttacggaaga
cacttaccattgaaaacaatggtgatcttcggtggagtaaaacaaggtgctcaggaagaa
aagctaaaaagaggagtagatatactcgtagcaactccggggcgtttgttagactttata
agccagggaattattacgctgaagaatctggatatttttgttctggatgaagcagacaga
atgctcgatatgggttttgttcatgatgtgaagcgtattttaaagcatttgccggagaaa
agacaaaatcttttcctttctgcaacaatgcctaaagaaatacaaaaactagcttccgag
atattggtaaatccagtaaaagtagaggtagcacctgtttcttctacagcagatactatt
gatcagtctgttttcttcgtagacaaagatgataagattaatcttcttattcatctccta
caggatcaaagtttatctcctgttatcgtcttctcccgtacaaaacacggagccgataaa
attgcgaagaaacttaatcagtctaaaatttctgctgaagccatccatggtaacaaatct
cagaatgcaagacaaaatgcactgaataacttcaagagcggaaaaacaagaattcttgta
gctactgatattgcggcgagaggaattgatattgataacctgaaatatgttgtcaacttc
gaactttcggatgtagccgaaacttatgttcaccgtatcggaagaacaggtagagcagga
gcttccggaacatcattctcatttgttgacggattagatttagtgaatctgagaaataca
gaaaagctgatcggaaagaaaatttttgtaaacaaagagcatcctttccatacagataat
ctggtagaacaaaaaagagattccaataataagccggtttctgcaagaccttcaaatgct
ggaaataataacaacagcagtaaaagaaatgtaaagtcttctaaaaagcctttctttaga
gggaaaaagaaatag
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