Elizabethkingia sp. 2-6: FCS00_08620
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Entry
FCS00_08620 CDS
T06039
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
elz
Elizabethkingia sp. 2-6
Pathway
elz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
elz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCS00_08620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
elz03019
]
FCS00_08620
03400 DNA repair and recombination proteins [BR:
elz03400
]
FCS00_08620
Enzymes [BR:
elz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FCS00_08620
Messenger RNA biogenesis [BR:
elz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FCS00_08620
DNA repair and recombination proteins [BR:
elz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FCS00_08620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
DnaD_N
GntR
zf-CXXC
Rrf2
Motif
Other DBs
NCBI-ProteinID:
QCO46437
UniProt:
A0ABD6YNW7
LinkDB
All DBs
Position
complement(1865327..1867228)
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AA seq
633 aa
AA seq
DB search
MIPSRSYNEQILDETLKQFWGYDHFRDQQKEIIQSVLSSNDTLALLPTGGGKSLCYQLPS
LLLEGTTIVISPLLALMKEQVHELNQRGIPAAYLSSEFDDEQEELIYQNLKNEEYKLLYV
SPERLTNRNFLENITDTRLSLIAVDEAHCISEWGSDFRPSYQNIKDFRQAYPYLPCLALT
ATASVKVMQEIQQKLDFKKTNIFKKSYRRDNLYIQIRELSDKYNHILYYLRSNEKSGLIY
VRTRKEAEYLSNWLKISGIEQVDYYHAGLPVKEKQIRQNYWLSKNNYTLVSTNAFGMGID
KDNVGFVIHLSPSPSIENYYQEIGRAGRNGQNAETILLWNQSELTQIDDLMRSQLASKTD
YQRVCSYVYSFCQVAEHELPEGFFEIQTNKIQNLTKISRPKIVSILRFLHNQEIIYLKES
KGMSSLELKFNISEVESLGKKDSFFVEKLSRALDGVATHRTYFREKKLTDKMNVDEQTMR
VRLRELHEKGLVDYFDGNSAGIRFLMPRNDKELQNRYWNLFASIQKNKLQKWEEMKFFIK
DTSYCKMRLILSYFGEKETENCGKCNYCLTSKMGTSDREYKKIIFEALMRSPMTLDELAV
HLKFYPKDELLEHLKILLDKGQVRMLNYKTYTL
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgattccgagccggtcttataatgaacagattttagatgaaacccttaagcagttttgg
ggttatgatcattttagagatcagcagaaggaaattattcaatccgtattatcttctaat
gatacactggctttattgcctacaggaggaggaaaatcattatgttatcaattaccatct
ttgcttttagaaggtacaacaatagtaatatcaccacttctggccttaatgaaagaacag
gttcacgagcttaatcaaagaggtattcctgctgcctatcttagttctgaattcgatgat
gaacaagaagaacttatttatcaaaatttaaaaaatgaagaatataagctgctttatgtt
tctccggaaagactgaccaacagaaattttctggaaaacattacagatacaagactatcc
ctaatagctgtagacgaagcacactgtatttcggaatggggaagtgattttcgtccaagt
tatcagaatataaaagatttcagacaagcttatccatatcttccgtgcctggcattaaca
gcaacggcttctgttaaagtgatgcaggaaattcagcaaaagctggattttaaaaagaca
aatattttcaaaaaatcttacagaagagataatctttatattcagataagagagctttcg
gataaatataatcatattctatattatctcaggagtaatgagaaatcgggtcttatctat
gtgagaaccagaaaagaagcggaatacctgagtaactggttaaagattagcggtatagag
caggtggattattatcatgcaggtttaccggtaaaagaaaagcaaatacgccagaattac
tggcttagcaaaaataattatacccttgtttctacaaatgcattcggaatgggtattgat
aaagataatgtaggatttgtaatacatctttctccatccccatctattgaaaattattat
caggaaataggccgtgcgggaagaaatgggcaaaatgcagaaactattttactttggaat
cagagtgagcttactcagatcgatgatctaatgagaagtcagttagccagtaaaactgat
taccaaagagtttgttcctatgtttattctttctgtcaagttgcagaacatgaacttccg
gagggtttctttgagattcagaccaataagatccagaatcttaccaaaatttcccgccct
aaaatagtatctattcttcgatttcttcataaccaagaaattatttacctgaaagaatcc
aaaggaatgtcatccctggaactaaaattcaatatatcagaagttgaaagcctgggtaag
aaagacagcttctttgtagaaaagttatcccgtgcattagacggggttgcaacgcatcga
acctattttcgggagaaaaagcttactgacaagatgaatgttgatgagcaaacgatgcgc
gtacgtttaagagaattgcacgagaaaggacttgtagattactttgatggtaattcagct
ggtatcaggtttctgatgccacgaaatgataaagaattacaaaacagatattggaatctt
tttgccagtattcaaaaaaataaattgcagaaatgggaggaaatgaaatttttcatcaag
gatacttcctattgcaagatgagacttattctttcatattttggagagaaagaaactgaa
aattgtgggaaatgtaactattgcctcacaagtaaaatgggaaccagtgacagagagtac
aaaaaaataatctttgaagctcttatgcggtcgccaatgactttggatgaattagctgtt
catctgaaattttatcccaaagatgaactattggaacacttgaaaattttgttagacaaa
ggccaggtcagaatgttgaattataaaacttatacactataa
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