Elizabethkingia sp. 2-6: FCS00_11465
Help
Entry
FCS00_11465 CDS
T06039
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
elz
Elizabethkingia sp. 2-6
Brite
KEGG Orthology (KO) [BR:
elz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
elz03016
]
FCS00_11465
Enzymes [BR:
elz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FCS00_11465
Transfer RNA biogenesis [BR:
elz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FCS00_11465
Prokaryotic type
tRNA splicing ligases
FCS00_11465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QCO46964
LinkDB
All DBs
Position
2461805..2463196
Genome browser
AA seq
463 aa
AA seq
DB search
MGNLKLKGKDILKIGYPNNQSVNVALEVMKRNFATKNIHYVKSLLKEILLHPENYEKDLS
FGQIAEALLLSKKTEKRMLNSQRAAFQIFGHNISEEAKNQLYTALKLPISLQGALMPDAH
SGYGLPIGGVLAVENAVIPYGVGMDIGCRMSLSILDTPVSYLDGARDKYEKALADHTKFG
MYETHKSHIEHEIFERDTFGMIPVLRRLKAKAIKQMGTSGGGNHFVEFGEVEITEEDSQI
GLPKGKYLGILSHSGSRGLGAEIAQYYSRVAVEQCPLPKEAQQFAWLDLSTHMGLEYWTA
MTLAGDYASACHDDIHRRLVKSVGGRVKAKIENHHNFAWKEIHNGKEVIVHRKGATPANE
NELGMIPGSMTAKGFIVRGKGNPDSLHSASHGAGRAHSRGACRSLFTQSDIRKELKLKNV
TLMGGNAEEAPMAYKDIYEVMNAQSELVDILGTFQPRIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatttaaaacttaaaggaaaagatatattaaagattggctatcctaataatcag
agtgttaatgttgctctggaagttatgaaaagaaattttgcaaccaaaaatattcattat
gtaaaatctcttttaaaagaaattctgctgcatccggaaaactatgaaaaagacttaagt
ttcggacaaatagcagaagctttattattatctaaaaaaactgaaaaacgaatgttgaat
agtcagagagctgcatttcagattttcgggcacaatatttcagaagaggcaaagaatcag
ctttatacagcgctaaagttgccaatatcgcttcagggagcattaatgcctgatgcacat
agtggctatggtcttccgatcggaggtgttctggcggtagaaaatgctgtaattccttac
ggtgtagggatggacattggctgcagaatgagccttagcatcctggatactccggtttca
tatctggacggagcaagagataaatatgaaaaagcactggcagatcataccaaattcggg
atgtatgaaacccataagtctcatattgaacatgaaatctttgagagggatacctttgga
atgattccggtgctgcgaagattgaaagcaaaagctattaaacagatgggaacatcagga
ggtggaaatcatttcgtcgaatttggtgaagtggagattacagaagaagatagccaaatc
ggccttccaaaagggaaatatctgggaattttgtcacatagtggttcccgtggcctgggt
gcagaaattgctcagtattactccagagttgctgtagagcaatgcccgctgcctaaagag
gcacagcaatttgcatggctagaccttagtactcatatgggcttggaatactggacagca
atgactctggccggagattatgcttcagcctgtcatgatgatattcaccgcagattggtt
aaatctgtaggagggagagtgaaagctaaaatagaaaatcatcacaactttgcctggaaa
gaaattcataacggaaaagaagtgattgttcaccgcaaaggagcaacaccggctaatgaa
aatgagttgggaatgattccgggatctatgacagcgaaaggatttattgttcgtggtaaa
gggaatcctgattcattacattcggcatcacatggtgccggaagggctcattccagagga
gcatgcagaagtctttttacacaaagtgatataaggaaagaactgaaattaaaaaatgtg
actctaatgggtgggaatgctgaagaagctccaatggcttataaagacatttatgaagta
atgaatgcacagagcgaattagtagatattctgggaacatttcaaccaagaattgtaaga
atggataagtag
DBGET
integrated database retrieval system
