Elizabethkingia sp. 2-6: FCS00_13130
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Entry
FCS00_13130 CDS
T06039
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
elz
Elizabethkingia sp. 2-6
Pathway
elz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
elz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FCS00_13130 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
elz03021
]
FCS00_13130 (rpoC)
03400 DNA repair and recombination proteins [BR:
elz03400
]
FCS00_13130 (rpoC)
Enzymes [BR:
elz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FCS00_13130 (rpoC)
Transcription machinery [BR:
elz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FCS00_13130 (rpoC)
DNA repair and recombination proteins [BR:
elz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FCS00_13130 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
RnfC_N
Biotin_lipoyl
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QCO47272
LinkDB
All DBs
Position
complement(2847619..2851881)
Genome browser
AA seq
1420 aa
AA seq
DB search
MSKNKTSRFSKITIGLASPESILQESRGEVLKPETINYRTHKPERDGLFCEKIFGPVKDY
ECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHISLVVPVAHIWYFRSLPNKIGYLL
GLPSKKLDMIIYYERYVVIQQGIARKADGSDFDEMEFLTEEEYLDTLDTLPQENQYLDDS
DPNKFVAKMGAEAIEEMLRRIDLDALSYDLRHRAHNESSKQRRTEALKRLSVVEALRGAN
TRMINRPEWMVMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIKA
PEVILRNEKRMLQEAVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKRV
DYSARSVIVVGPSLQLHECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEPV
VYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQMA
VHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKEAHSTDTNKVKG
EGLAFYSPEEVEIAYAEGQVSLNAKVKCRLPVKENGELVTRLTPTTVGRILFNQIVPKQV
GYIDELLTKKSLRNVIGRILDETDFPTTVKFLDDMKDLGYTNAFKGGLSFSLGDIVVPAE
KKTMIASAVENVDEIKANYNMGLITDTERYNQVIDVWTNTNAKLTEMIMDRMKSDQGGFN
SVFMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSVGAEIIENPIVANFKEGLSILEYFI
STHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTVDDCGTLRGVEITPLKKNDEIVEK
ISERVLGRVSLHNIYDPETDELLVEADQLIDEKLAKKIEAAGIESVEARSPLTCETKRGI
CAKCYGRNLATGKMIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNISENPSIVAKR
DGIVEMDEVRTIKSEGEDGNTTDIVVSRSTEFRLVMDNETRTVIMTANVPYGAELAVKPG
DKVSKGDLICKWDPYNAVIIAETSGKVEYEDIIQGVSFQLEIDEQTGFEEKVISDSRNKK
AVPTLRVVDAKGIEQKSYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPRV
TELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELVVEAKTGEIKKYLVKLSNQILVQEND
FVRAGSPLSDGSVTPDDILSIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMMT
KVEIVDGGDTQFLEGSLEHKNDFIEENERVFGLKVVINPGDSKEFKSGQMITARELRDEN
SKLKREDQELVEVREALPATAQPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVSGKV
DDLNGLKENVIVGHRIPAGTGLKQYQNIIVGSTKEFEDIN
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaataaaacaagtagatttagtaaaatcacgattggtttagcttctccagag
tctattcttcaggaatcaagaggagaggttctaaagccagaaacgattaactatcgtaca
cacaaacctgaaagagatggtttgttctgcgaaaaaatattcggtcctgtaaaggattac
gaatgtgcttgtggtaaatataaaagaatccgttacaagggtatcgtttgcgaccgttgt
ggggttgaagtaactgagaaaaaagtaagacgtgagcgtatcgggcacatcagtttggtt
gttcctgttgcacacatctggtatttccgttctttacctaacaaaattggttacttacta
ggtttaccttccaagaaattggatatgattatctactacgaaagatatgtagtaatccaa
caaggtatcgctagaaaagctgatggttccgatttcgacgaaatggaattcttaactgaa
gaagaatatcttgatactttagatacgcttccacaagaaaaccaatacctggatgattca
gatcctaacaaattcgttgcgaagatgggggctgaagctatcgaagaaatgttgagaaga
atcgatcttgatgcgctttcttatgacctaagacacagagcacacaacgaatcttcaaaa
caaagaagaactgaagcattaaagagactttctgttgtagaagcattgagaggtgctaat
acaagaatgatcaaccgccctgagtggatggtaatgcgtgttcttccggttataccacca
gaattaagaccactagttccattggatggtggacgtttcgctacttccgacttaaatgac
ctttacagaagagttatcatcagaaataaccgtctgaagagacttttggagatcaaagct
ccggaagtaatcttaagaaacgagaagcgtatgcttcaggaagcagtagattcattattc
gataacaccagaaaatcttctgctgttaagtctgaatctaacagaccattgaaatctctt
tctgattcattgaaaggtaagcaaggtcgtttccgtcagaacttattaggtaaaagggtt
gactactctgctcgttcggtaattgttgtaggtccaagcttgcaactacacgagtgtggt
cttccaaaagatatggcagctgagctttacaaaccatttatcattagaaaactaatcgag
agaggtattgtaaaaactgtaaaatctgctaagagaatcatcgacagaaaagaacctgtt
gtttatgatatcttagaaaacgtaatgaaaggacaccctgttcttctgaacagggcacct
acccttcaccgtttaggtatccaggcattccagcctaagatgatcgaaggtaaggctatc
caacttcacccgctagtaacaacggcattcaacgccgacttcgatggtgaccagatggca
gtacacttaccactaggtcctgaagctattctggaagctcagttattgatgttaggttcc
caaaacatcctaaaccctgcgaatggttctccaattacggtaccttctcaggacatggta
ttgggtctttacttcatgaccaaagaagcgcattcaacggatacaaacaaagtaaaagga
gaaggcttagcattctactcacctgaagaggtagagattgcttatgcagaaggacaagta
tcgttgaacgctaaagtaaaatgccgtttaccagttaaagaaaacggtgaattagtaaca
agactgactcctacaactgttggtagaattctattcaaccagattgtaccaaaacaagta
ggttatattgatgagttattgactaagaagtcattaagaaacgttatcggtagaattttg
gatgaaactgatttccctactactgtgaagttccttgatgatatgaaagatcttggttac
accaacgcattcaaaggaggtctttcatttagccttggagatatcgtggttcctgctgaa
aagaaaaccatgattgctagtgctgttgaaaatgtagatgagattaaggctaactataac
atggggcttatcaccgatactgaacgttacaaccaggtaatcgacgtttggacaaatacc
aacgcgaagcttactgaaatgattatggacagaatgaagtctgatcaaggtggtttcaac
tcagtatttatgatgcttgactctggggcgaggggttctaaggaacagattcgtcagtta
tccggtatgagaggtctaatggcaaaaccacaaaaagctggttcagttggagcggagatt
atcgaaaacccgattgtggctaactttaaggaaggtctttccatcttggagtactttatc
tctacccacggtgcgcgtaagggtcttgcggataccgctcttaaaactgccgatgcgggt
tacctgactcgtcgtttggtagacgttgctcaggacgttatcgttactgttgacgactgt
ggtacattaagaggtgtggagattacgccattgaagaaaaatgacgaaatcgttgagaaa
atctctgaaagagtattaggtagagtttctcttcacaatatctatgatcctgaaaccgat
gaattattggtagaagctgatcaacttattgatgagaaattagcgaagaaaattgaagct
gcaggtatcgaatctgtagaagctcgttctccgttaacttgtgaaactaagagaggtatt
tgtgcgaagtgttatggtagaaacctggcaacaggtaaaatgatccacatgggtgaagct
gtaggtgttatcgctgcacaatccattggtgagcctggtacacagttaacattgagaacc
ttccaccaagggggtactgcgggtaacatttctgaaaacccatctatcgttgcaaaacgt
gatggtatcgtagaaatggacgaagtaagaaccattaagagtgaaggtgaagatggtaac
acaacagatatcgttgtttcccgttctactgaattccgtttggtaatggataacgaaacc
agaacagtaattatgacggcgaatgtaccttatggtgctgagcttgctgtaaaacctggt
gacaaagtaagtaaaggagatcttatctgtaagtgggatccgtataacgcggtaatcatt
gctgaaacatcaggtaaggttgaatacgaagatattattcaaggggtttctttccaattg
gaaattgacgaacaaaccggtttcgaggaaaaagtaatctctgattccagaaacaaaaaa
gcagtacctactcttagagtggtagatgctaaaggtattgaacagaaatcttacaacctt
ccggtaggtgcccacttaatggttaacgatggtgagaaaattaaggctggtaaagtctta
atcaaaatcccaagaaaatctgctaaagcaggggatatcaccgggggtcttccaagagtt
accgaattattcgaagctcgtaacccatctaacccagcggttgttactgaaatcgacggt
gtagtatcttacggtaaaatcaagagaggtaaccgtgaacttgttgttgaagctaaaact
ggtgagatcaagaaatatcttgtaaaattatctaaccagatccttgttcaggaaaatgac
ttcgtacgtgcaggttctccactttctgatggatccgttactccggatgacatcctaagc
attaaaggaccaactgcggtacaggaatacttagtaaatgagattcaggaagtttaccgt
ctacagggggtaaaaattgatgataagcacttcgagatcatcgttcgtcagatgatgact
aaagtagaaatcgttgatggtggtgatactcaattccttgaaggcagccttgagcacaag
aatgacttcatcgaagaaaacgaaagagtattcggtcttaaagtagttattaacccagga
gattctaaagaattcaaatctggtcagatgattactgcaagagaattaagagacgagaac
tctaagttgaagcgtgaagatcaggaattagttgaagtaagagaagctttaccagctaca
gcacagcctgtattacaaggtattacaagagcagctcttcaaactaaatccttcatgtct
gcagcttccttccaggaaactactaaagtacttaacgaggcagcagtgtctggtaaagta
gatgatctgaatggtcttaaagaaaatgtaattgtaggtcacagaatccctgcaggtaca
ggtcttaagcaatatcagaatatcattgtaggttctacaaaggaatttgaggatataaat
taa
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integrated database retrieval system
