Elizabethkingia sp. 2-6: FCS00_19845
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Entry
FCS00_19845 CDS
T06039
Name
(GenBank) RNA polymerase sigma factor RpoD/SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
elz
Elizabethkingia sp. 2-6
Pathway
elz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
elz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FCS00_19845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
elz03021
]
FCS00_19845
Transcription machinery [BR:
elz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FCS00_19845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r1_2
Sigma70_r4_2
PgaD
DUF6285
DUF7443
Motif
Other DBs
NCBI-ProteinID:
QCO48507
LinkDB
All DBs
Position
4321652..4322518
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AA seq
288 aa
AA seq
DB search
MRQLKITKQVTNRETASLDKYLQEIGKVELITADEEVDLAQKIRAGDRVALEKLIKANLR
FVVSVSKQYQNQGLSLPDLINEGNLGLMKAAKRYDETRGFKFISYAVWWIRQSILQALAE
QSRIVRLPLNKIGSINKINKAYAHLEQENERPPSPEELAEVLDMSEEDIKESMKNSGRHL
SMDAPLVEGEDSNLYDVLRSGESPSPDKDLMLESLQIEIERALNTLTPREADLVRLYFGL
NGKHPMTLEEIGETFDLTRERVRQIKEKAIKRLKHNSRSKILKSYLGK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgagacaacttaaaattaccaagcaggttaccaacagggaaactgcatcgttggacaag
taccttcaggaaatcggaaaagtagaattgattacagctgatgaagaggtagatttagca
cagaaaattcgcgcaggagacagagtagctttagaaaaactaattaaagctaaccttcgt
ttcgtggtttctgtatctaagcaataccagaatcagggtctttctcttcccgatttgatt
aacgaagggaatcttggtttaatgaaagctgcgaaacgttatgacgagaccagagggttt
aagtttatttcttatgcagtatggtggattcgtcagtctattcttcaggcattggcagaa
cagtcaagaattgttcgtcttcctttaaacaagattggttctattaataaaattaataag
gcctacgctcacttagagcaggaaaatgaaagaccgccttcaccagaagaattggcagaa
gtactggatatgagtgaagaggatattaaagaatccatgaagaactcgggtcgtcacctt
tctatggatgctccattagttgagggtgaagattctaacctttacgacgttcttcgctca
ggtgaatctccttctccggataaagatttgatgcttgaatctctacagattgaaatagaa
agagcattgaatactttaacaccaagagaagcagatttagtaagattatacttcgggtta
aacggtaaacaccctatgactcttgaagagatcggagaaacatttgatctgaccagagaa
cgtgtgcgtcagattaaagaaaaagctattaagagattaaagcataacagcagaagcaaa
attcttaaatcttatttaggaaagtaa
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