Escherichia marmotae: C1192_05615
Help
Entry
C1192_05615 CDS
T05353
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ema
Escherichia marmotae
Brite
KEGG Orthology (KO) [BR:
ema00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ema03016
]
C1192_05615 (rnb)
Enzymes [BR:
ema01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C1192_05615 (rnb)
Transfer RNA biogenesis [BR:
ema03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
C1192_05615 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
OSR1_C
S1CSD-TOTE-2
ODP
PilZ
Motif
Other DBs
NCBI-ProteinID:
AUT26649
LinkDB
All DBs
Position
1051563..1053497
Genome browser
AA seq
644 aa
AA seq
DB search
MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
IAVIHSEKDRESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLKDAIPCRAARGLNH
EFKEGDWAVAEMRRHPLKGDRSFYADLTQYITFGDDHFVPWWVTLARHNLEKEAPDGVAT
EMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSK
LDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGIIEDNIEF
FAATIESKAKLVYDQVSDWLENTGDWQPESDAIAGQIRLLAQICQRRGEWRNNHALVFKD
RPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFD
PANAEALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTE
PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAIIKGETATRPQDEITTQMAERRRLNRM
AERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE
LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggacaacccgctgctagcgcagcttaaacagcaactgcactcccagacgccc
cgcgctgaaggggtggtaaaagccactgaaaaaggctttggcttcctggaagtcgacgca
cagaaaagttatttcattccgccgccgcagatgaaaaaagtcatgcatggcgaccgaatt
atcgcggtgatccacagtgaaaaagatcgtgaatccgcagagccagaagaactggttgaa
ccgtttctgactcgtttcgtgggtaaagttcagggcaagaatgaccgtctggccatcgtg
cctgatcatccactcttaaaagacgctattccttgccgcgctgcccgcgggctgaatcat
gagtttaaagaaggcgactgggcggttgccgaaatgcgccgccatccgctgaaaggcgat
cgttctttctatgccgacctgactcaatacatcacttttggtgatgaccacttcgtgccc
tggtgggtaaccctggcgcgccataacctggaaaaagaagcaccagatggcgtcgccacc
gaaatgctcgatgagggtttggttcgtgaagatctcaccgcgctggactttgtcaccatc
gacagtgccagcacggaagatatggatgatgccctcttcgcgaaggcgttaccggatgac
aaactgcagttaattgtcgcaattgccgatccaaccgcgtggattgccgaaggcagcaag
ctggacaaagcagcgaaaattcgcgcattcaccaactatctgccgggcttcaacatcccg
atgctgccgcgcgagctttctgacgatctctgctcactgcgtgccaatgaagtgcgcccg
gtactggcatgtcggatgacgttgtctgctgatggcatcattgaagacaacatcgaattt
tttgctgctaccatcgaatccaaagccaaactggtttatgaccaggtttccgactggctg
gaaaacaccggcgactggcagccagaaagtgatgcgattgccggacaaatccgcctgtta
gcgcaaatttgccagcgtcgcggcgaatggcgtaataaccatgcgttggtgtttaaagat
cgcccggattaccgttttattctcggtgaaaaaggtgaagtgttggatatcgtcgctgaa
ccacgccgtattgctaaccgtattgtcgaagaagcgatgatcgccgctaacatttgtgcg
gcccgcgtgctgcgcgataagctcggtttcggtatctataacgtgcatatgggctttgat
ccggcaaatgccgaggcgctggcagcattgctgaaaacgcatggcctgcatgttgatgcc
gaagaagtgctcacactggacggtttctgcaaactgcgtcgtgagctggatgcgcaaccg
actggcttcctcgacagccgcattcgccgttttcagtcttttgcggaaatcagcaccgaa
ccgggtcctcactttggcctcggtctggaagcgtatgccacctggacttcaccaattcgt
aagtatggcgacatgatcaaccatcgtctgctgaaagcgatcatcaaaggcgaaacggcg
acgcgtccgcaggatgagatcaccacccaaatggcagagcgtcgtcgtctcaaccggatg
gcagaacgtgatgtcggggactggttgtacgcgcgtttcctgaaagacaaagcgggcact
gacacccgttttgcggcagaaatcgtcgatatcagccggggcggtatgcgtgtgcgtctg
gtcgataacggcgctatcgcctttatccctgcaccgttcttacacgccgtgcgcgatgag
ctggtttgcagtcaggaaaacggcaccgtacaaattaaaggtgaaacagtttacaaagta
accgacgttatcgacgtcaccattgccgaagtacgcatggaaacccgcagcattattgcg
cgccctgtcgcgtaa
DBGET
integrated database retrieval system
