Escherichia marmotae: C1192_06665
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Entry
C1192_06665 CDS
T05353
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ema
Escherichia marmotae
Pathway
ema03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ema00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1192_06665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ema03400
]
C1192_06665
Enzymes [BR:
ema01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1192_06665
DNA repair and recombination proteins [BR:
ema03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C1192_06665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AUT26827
UniProt:
A0A7W3AIR5
LinkDB
All DBs
Position
1248113..1251559
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS
QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPH
SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY
RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD
PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLENSAERFQADTL
ARFESRGVDPMRPLLPPQSLWLRVDELFSALKNWPRVQLKTEHLPTKAANANLGFQKLPD
LAIQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASE
RGRYLMIGAAEHGFIDTVRHLALICESDLLGERVARRRQDSRRAINPDTLIRNLAELHIG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDVWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQAQILTEVAEGKIDILIGTHKLLQNDVKF
KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAVLREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTPDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLEIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKQRIDWVRQFMR
ELEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgttatacgctgcccgtcaaagcgggtgagcagcgtctgctgggc
gagttaaccggagctgcctgcgcgacgctggtagccgaaattgccgaacgtcacgccgga
ccggtggtgcttattgcaccagatatgcaaaatgccctgcgtttgcacgatgaaatcagc
cagttcaccgaccagatggtgatgaacctggcggactgggaaaccctcccctacgacagt
ttttcgcctcatcaggacattatctcctcgcgtctttccaccctttaccagttaccatca
atgcagcgtggcgtactgattgttccggtgaatacgcttatgcagcgcgtttgcccgcac
agttttctccacggccatgcgctggtaatgaaaaaaggtcagcggttatcgcgcgatgca
ttgcgtacccaactggacagcgctggttatcgccatgttgatcaggtgatggagcacggc
gaatacgccacgcgtggtgcgttgctggatcttttcccaatgggcagcgaactgccttat
cgtcttgatttttttgatgatgaaatcgacagcctgcgggtatttgacgtcgacagccag
cgcacgctggaagaagtggaagccatcaacctgctgcccgcacatgaatttccgaccgat
aaagcggcgattgagctgttccgcagtcagtggcgcgatacttttgaggtgaaacgcgat
ccggaacatatttaccagcaagtgagtaaaggcacgctgcctgccgggatcgaatactgg
cagccgctgttcttcagcgaaccgctgccgccactgttcagttatttcccggccaatacg
ttgctggtgaataccggcgatctggaaaacagtgccgaacgtttccaggccgatacgctg
gcgcgttttgaaagtcgcggcgtcgatccgatgcgaccgctattgccgccacaatcgctc
tggctgcgagtggatgaacttttctcggcgttaaaaaactggcctcgcgtgcagcttaaa
accgagcatttaccgacgaaagcagcgaatgccaatttaggttttcagaaactgccagac
ctggccattcaggcgcaacaaaaagcgccgctggatgcgctgcgtaaatttctcgaatcc
ttcgatggcccggtggtgttctcggtagaaagtgaaggccgccgcgaagcactcggggaa
ctgctcgcccgaatcaaaattgccccgcaacgcattatgcgtctcgatgaggccagcgag
cgtgggcgttatctgatgatcggtgctgccgaacatggttttatcgatacagtacgtcat
ctggcgctgatttgtgaaagcgatctgctcggtgaacgtgttgcccgtcgtcgtcaggac
tctcgtcgcgccatcaacccagacacgctgatccgcaacctcgcggagctgcatatcggc
cagccggttgttcacctggaacatggcgtcgggcgctatgccggaatgaccacgctggag
gctggcggcattacgggcgagtatctgatgctcacctacgccaacgacgccaaactgtat
gttccggtatcatcgctgcacctgattagccgttacgccggtggcgcagaagaaaacgct
ccgctgcataaacttggcggagatgtgtggtcacgggcgcggcagaaagcggcggaaaaa
gtgcgtgatgtggcagcggaactactggatatctacgcccaacgcgctgccaaagaaggc
ttcgcgtttaaacacgatcgcgaacaatatcaattgttctgcgacagcttcccgttcgaa
accacgccggatcaggcgcaggccatcaacgcagttcttagcgacatgtgtcggccactg
gcaatggatcgtctggtgtgcggtgacgttggctttggtaaaacggaagtggcgatgcgt
gccgctttcctggcggtggaaaaccacaagcaggtggcagtgctggtgccaaccaccctc
ctcgcccaacaacactacgacaacttccgcgaccgttttgctaactggccggtgcgcatc
gaaatgatctcccgtttccgcagcgccaaagaacaggcgcaaatccttacggaagtggcg
gaagggaaaatcgatattttgatcggcacgcacaaactgctgcaaaacgacgtcaagttt
aaagatttgggcttgctgattgtcgatgaagaacaccgctttggtgtccgtcataaagaa
cgcattaaagcgatgcgcgcgaacgtcgacatactgacgctcaccgcgacaccaattccg
cgcacgctgaacatggcaatgagtggaatgcgcgatctgtcaattatcgccacaccgccc
gcccgtcgtctggcggtcaaaacgtttgtccgcgagtacgacagcctggtcgtccgggag
gccgtcctgcgtgaaattttgcgtggggggcaggtttattatctctacaatgacgtggaa
aacatccagaaagccgccgaacggctggcggaactggtgccagaagcacgaattgccatc
ggtcacgggcagatgcgtgagcgcgaactggaacgggtgatgaatgatttccatcaccag
cgtttcaacgtgctggtttgtaccacaattatcgaaaccgggatcgacattcctaccgcc
aacaccattatcattgaacgcgcggatcatttcggtctggcgcagttgcaccagttgcgc
ggtcgcgtcggacgctcacaccatcaggcgtatgcgtggctgctgacgccacatccgaaa
gcgatgactcccgatgcgcaaaaacgtctcgaggcgattgcgtctctggaagaccttggc
gcgggctttgcgctggcaactcacgatctggagattcgcggtgcgggtgaactgctcggt
gaagaacaaagtggttcgatggaaaccatcggtttctcgctgtatatggagttgctggaa
aacgccgttgatgcgctgaaagccggacgcgagccgtcgctggaagatctcaccagccag
caaacggaagtcgaactgcggatgccgtcgctactgccggacgatttcatccctgacgtg
aatacacgtctgtcgttctataaacgcattgccagcgccaaaacggaaaatgaactggaa
gagatcaaagtagagcttatcgatcgcttcggcctgctgccggatccggcacgtactctg
ctggagattgcccgcctgcgccagcaagcgcagaagctggggatccggaagctggagggg
aatgagaaaggcggcgtgatcgaatttgccgagaagaatcacgtgaatccagcctggttg
attggtttgctgcaaaaacagccgcagcactatcgtctcgatggcccgacgcgcctgaag
tttattcaggatttgagcgagcggaaacaacgtatcgactgggtgcgccagtttatgcgt
gagctggaagagaacgccatcgcgtag
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