Escherichia marmotae: C1192_08340
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Entry
C1192_08340 CDS
T05353
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ema
Escherichia marmotae
Pathway
ema03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ema00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1192_08340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ema03019
]
C1192_08340
Enzymes [BR:
ema01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C1192_08340
Messenger RNA biogenesis [BR:
ema03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1192_08340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AUT27123
UniProt:
A0A2B7MNM2
LinkDB
All DBs
Position
complement(1605758..1607122)
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AA seq
454 aa
AA seq
DB search
MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL
QHLISREPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAK
RQNLLFSATFSDEIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSHMI
GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
EKLLKKEIPRIAVPGYEPDPSIKAEPIQNGRQQRSGGGRGQSGGRSQQQPRRAESGAKAG
NAKPAAKPSRRLGDAKPAGEQQRRRRPRKPAAAQ
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgattctttgggtttaagccctgatatcctgcgcgccgttgccgagcaaggt
taccgtgaacccacccctattcagcagcaggcgatccccgcagtactggaaggccgtgat
ctgatggccagtgcccagaccggcacgggtaaaacagcgggctttacgctgccgctactg
caacacctgatttcccgtgagccgcacgccaaagggcgtcgtccggttcgtgcgttgatc
ctcaccccgacccgtgaactggcggcgcagattggcgaaaacgtccgtgattacagcaaa
tacctgaacattcgttcgctggtggtgtttggcggcgtcagcattaacccgcagatgatg
aaactgcgcggcggtgttgatgtgctggtggcaacgcccgggcgtctgctggatctggaa
caccagaatgcggtgaaactggatcagatagaaatcctcgtccttgatgaagctgaccgt
atgctcgatatgggctttatccacgatattcgccgtgtgttaacaaagctgcccgcgaaa
cgccagaacctgctgttctccgcgactttctctgacgagattaaagcgctggcagaaaaa
ctgctgcataacccgctggaaatcgaagtggcgcgccgtaatacagcctctgagcaagtg
acccagcacgttcattttgttgataagaaacgcaaacgggaattactgtcgcacatgatt
ggtaaaggtaactggcagcaggtgctggtgtttacacgtaccaaacatggtgccaaccat
ctggcagaacagctaaataaagatggcatccgcagtgcggcgatccacggtaataaatcg
caaggtgcgcgtactcgtgcgttggccgattttaaatcgggtgatattcgtgtgctggtg
gcgaccgatatcgccgcgcgtggcctggatatcgaagagttgccacacgtcgtcaactat
gagctgccaaacgtaccggaagattacgtgcaccgcatcgggcgtaccggtcgtgccgca
gccaccggcgaagcgttatcgctggtgtgtgttgatgagcacaaactgttgcgcgatatc
gaaaaactgctgaaaaaagagatcccgcgtatcgctgttccgggctatgagccggatccg
tcaattaaagccgaaccgatccagaacggtcgccagcaacgcagcggcggcggtcgtggg
cagagcggtggtcgtagtcaacagcaaccgcgtcgcgcagaaagcggtgcgaaggctggt
aacgcgaagcctgcagcaaaaccgtctcgtcgtcttggtgatgccaaaccggcaggcgag
caacaacgtcgccgccgtccgcgtaaacctgccgcagctcagtaa
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