Escherichia marmotae: C1192_12005
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Entry
C1192_12005 CDS
T05353
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ema
Escherichia marmotae
Pathway
ema03030
DNA replication
ema03430
Mismatch repair
ema03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ema00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C1192_12005
03430 Mismatch repair
C1192_12005
03440 Homologous recombination
C1192_12005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ema03032
]
C1192_12005
03400 DNA repair and recombination proteins [BR:
ema03400
]
C1192_12005
Enzymes [BR:
ema01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C1192_12005
DNA replication proteins [BR:
ema03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C1192_12005
DNA repair and recombination proteins [BR:
ema03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C1192_12005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AUT27744
UniProt:
A0A2B7LKJ8
LinkDB
All DBs
Position
complement(2312350..2315832)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA
GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW
LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES
YLHAAVELAERRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL
EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ
FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRGLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaccacgtttcgttcacctacgggtgcacagcgactactcgatgatcgatggt
ctggcaaaaaccgcgccgctggtaaaaaaggcggcggcgttggggatgccggcactggcg
atcactgatttcaccaacctttgcggtctggtgaagttctacggagcgggacatggcgca
gggattaagcctatcgtcggggcggattttaatgtccagtgcgacctgctgggtgatgag
ttaacccacctgacggtgctggcggcgaacaataccggctatcagaatctgacgttgctg
atctcaaaagcgtatcagcgcgggtatggtgccgccgggccgatcatcgatcgcgactgg
cttatcgaattaaacgaagggttgatcctcctctccggcggacgcatgggcgacgtcggg
cgcagccttttgcgtggtaacagcgcactggtagatgagtgtgtcgcgttttatgaagag
cacttcccggatcgctattttctcgaattgattcgcaccggcaggccggatgaagaaagc
tatttgcacgcggcggtggaactggcggaaaggcgcggtttgcctgttgtggcaaccaac
gacgtgcgctttattgacagcagtgatttcgacgcgcacgaaatccgcgtcgcgatccac
gacggctttaccctcgacgatcccaaacgtccgcgtaactattcgccgcagcaatatatg
cgtagcgaagaggagatgtgcgagctgtttgccgacatcccggaagctcttgctaacacc
gtggagattgccaaacgttgtaacgtgaccgtgcgtcttggtgaatacttcctgccgcag
ttcccgaccggggacatgagcaccgaagattatctggttaagcgagcaaaagaaggtctg
gaagagcgtctggcatttttattccctgacgaagaagaacgtcttaagcgccgcccggaa
tatgacgagcgtctggatactgaactccaggttatcaaccagatgggcttccctggctac
ttcctcatcgttatggaatttatccagtggtcgaaggataacggtgtaccggtagggcct
ggccgtggttccggtgcggggtcactggtggcctacgcgctgaaaatcactgacctcgat
ccgctagaattcgacctgctgttcgaacgtttccttaacccggaacgtgtctccatgcct
gacttcgacgttgacttctgtatggagaaacgcgaccaggttatcgaacatgtggcggac
atgtacggtcgcgatgcggtatcgcagatcatcaccttcggtactatggcggcaaaagcg
gtgatccgcgacgtaggtcgcgtgctggggcatccgtatggctttgtcgatcgtatctcg
aaactgatcccgccagatccggggatgacgctggcgaaagcgtttgaagccgagccgcag
ttgccagaaatttacgaagcggatgaagaagttaaggcgctgatcgacatggcgcgtaaa
ctggaaggggttacccgtaacgcgggtaaacacgccggtggggtggttatcgcgccgacc
aaaattaccgattttgcgccgctttattgcgatgaagaaggcaaacatccggtcactcag
tttgataaaagcgacgttgaatacgccggactggtgaagttcgacttcctcggcctgcgt
actctcaccatcatcaactgggcgctggagatgatcaacaagcggcgggcgaaaaatggc
gagccgccgctggatatcgccgcgatcccgctggatgacaagaaaagtttcgacatgctg
caacgctcggaaaccacagcggtattccagcttgaatcgcgcggcatgaaagatttgatc
aagcgtctacaacctgactgcttcgaagatatgatcgcactggtggcgctgttccgccca
ggtccgttgcaatcagggatggtggataactttatcgaccgtaaacatggtcgcgaggag
atctcctacccagacgtgcagtggcagcatgaaagcctgaaaccggttctggagccaact
tacggtattatcctgtatcaggaacaggtaatgcagattgcccaggtactttctggctat
accctcggcggcgcggatatgctgcgtcgtgcgatgggtaagaaaaagccggaagagatg
gccaagcagcgttctgtttttgccgaaggtgcagaaaagaacggcatcaatgccgaactg
gcgatgaaaatcttcgacctggtagagaaattcgcgggttacggatttaacaaatcgcac
tctgcggcctatgctttggtgtcttatcaaacgttatggctgaaagcgcactatccggca
gagtttatggcggcggtaatgactgccgatatggacaataccgagaaagtggttggcctg
gtggatgagtgctggcggatgggccttaaaatcctgccgccagatataaactccggtctt
taccatttccacgtcaacgatgacggggaaatcgtgtatggtattggcgctatcaaaggg
gtgggtgaagggccaattgaggccatcatcgaagcccgtaataaaggtggctacttccgc
gaactgtttgatctttgtgcccgtaccgacaccaaaaaactgaaccggcgggtgctggaa
aaactgatcatgtcaggggcatttgaccgcctggggccacatcgcgcggcgttaatgaac
tcgctgggcgatgcgttaaaagcggcagatcaacacgcgaaagcggaagccatcggccag
gccgatatgttcggcgtgctggcagaagagccggaacaaattgaacaatcctacgctagc
tgccagccgtggccggagcaggtggtgttagatggggagcgcgaaacgttgggtctgtac
ctgacgggccacccgatcaaccagtatttaaaagagattgagcgttatgtcggaggcgta
aggctgaaagacatgcacccgacagaacgtggtaaagtcaccacggctgcggggctcgtt
gttgccgcgcgggttatggtcaccaagcgcggcaatcgtatcggtatctgcacgctggat
gaccgttccgggcggctggaagtgatgttatttactgacgccctggataaataccagcaa
ttgctggaaaaagaccgcatacttatcgtcagcggacaggtcagctttgatgacttcagc
ggtgggcttaaaatgaccgctcgcgaagtgatggatattgacgaagcccgggaaaaatat
gctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccaccgctctgggacaattccagtacatctctactatcag
agggcggatgcacgtgcacggttgcgttttggcgcgacgtggcgtgtctctccgagcgat
cgtttgttaaacgatctccgtggcctcattggttcggagcaggtggaactggagtttgac
taa
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