Escherichia marmotae: C1192_12680
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Entry
C1192_12680 CDS
T05353
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
ema
Escherichia marmotae
Brite
KEGG Orthology (KO) [BR:
ema00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ema03021
]
C1192_12680
Transcription machinery [BR:
ema03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
C1192_12680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUT27867
LinkDB
All DBs
Position
2460961..2463867
Genome browser
AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDT
ITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQI
DRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG
LGKTIEAGMILHQQLLSGAAERVLIIVPKTLQHQWLVEMLRRFNLRFALFDDERYAEAQH
DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE
QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLL
AGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRN
TRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGD
NATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRAIYDSVYNDLINYLASPDQT
EGFDELIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAM
NLFDIIGINQDDRGDNLIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWE
HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPPTP
VRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQEVHAILQLGEAQIEKSAR
ALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELAAIESNRQQVMESLDQAGWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgatacagaaagcgaattaggacttgga
accgttgtcgcggtggatgcgcgaactgtcactttacttttcccatctactggtgaaaac
cgtctgtatgcacgcagtgattctcccgtgacccgcgtgatgttcaaccctggtgatacc
attaccagccatgacggctggcagatgcaagtcgaagaagtaaaagaagaaaatggcttg
ctgacctatatcggtactcgcctggataccgaagagtccggcgtggctctgcgtgaagtt
ttccttgatagcaagctggtgttcagcaaaccgcaggatcgtctgtttgccgggcagatt
gaccgtatggaccgctttgcgttgcgttatcgcgcgcgtaagtattccagcgaacagttc
cgtatgccgtacagtggcctgcgcggtcagcgtaccagcctgatcccgcatcagctcaac
atcgcgcatgatgtcggccgccgccatgcgccgcgtgtcctgctggctgacgaagtcggt
ttagggaaaaccattgaagctgggatgatcctgcatcagcaactactgtctggcgctgcc
gagcgtgtgctgattatcgtgccgaaaaccttgcaacatcagtggctggtagaaatgctg
cgccgcttcaacctgcgttttgcgctgtttgatgacgagcgttacgccgaagcccagcac
gacgcctacaacccgttcgataccgaacaactggtgatttgctcgctagattttgcccgc
cgcagcaaacagcgtctggaacatctgtgcgaagccgaatgggatcttctggttgtcgat
gaagcgcaccacctggtgtggagcgaagatgcgccgagccgtgaatatcaggccattgaa
caactggcagagcatgtgcctggcgttctgctgctgaccgcaaccccggaacaactgggg
atggaaagccactttgcccgcctgcgtctgctggacccgaaccgtttccacgatttcgcg
caattcgttgaagagcaaaaaaattatcgtccggtggccgatgccgttgccatgctgctg
gctggtaacaaactgagcaacgacgagctgaacatgttaggtgaaatgattggcgagcag
gacatcgaaccgctattgcaggctgcaaacagcgatagtgaagatgcccagagcgcccgt
caggagctggtttccatgctgatggatcgccacggcaccagccgcgtgctgttccgtaac
acgcgtaatggcgtaaaaggcttcccgaaacgcgaactgcacaccattaagctgccgctg
ccgacgcagtatcagacggcaattaaagtgtccggcattatgggcgcacgtaagagtgcg
gaagatcgcgctcgcgatatgctctacccggaacgtatttatcaggaatttgaaggcgat
aacgccacctggtggaacttcgatccgcgcgttgagtggttgatgggctacctgaccagc
caccgctcgcagaaagtgctggtgatctgcgccaaagctgccaccgcgctgcaactggag
caggtactgcgcgagcgtgaaggtatccgcgcagccgtgttccacgaaggcatgtcgatt
atcgaacgtgaccgcgctgccgcctggtttgcagaagaagacaccggcgcgcaggtactg
ctgtgctcagaaatcggttctgaagggcgtaacttccagttcgccagccacatggtgatg
ttcgatctgccgttcaacccggatctgctggaacagcgtattggtcgtctggatcgtatc
ggtcaggcgcacgatattcagatccacgtaccttatctggagaaaacagcccagtcggta
ctggtgcgctggtatcacgaaggtctggatgcattcgagcacacctgcccgaccggacgc
gctatctacgatagtgtgtacaacgatctgattaactacctggcttcaccggatcaaacc
gaaggctttgatgagttgatcaaaaattgccgcgagcaacatgaagccctgaaagcgcaa
ctggagcagggccgtgaccgtctgctggagatccattccaacggcggcgaaaaagcccag
gcgctggctgaaagcattgaagaacaggatgacgataccaacctgatcgccttcgccatg
aacctgttcgatattattggtatcaaccaggacgatcgtggcgacaacctgatcgtactg
acgccttccgatcatatgctggtgccggacttcccgggtttgtcggaagacggtattacc
atcaccttcgaccgtgaagtagcgctggcgcgtgaagatgcacagtttattacctgggag
catccgctgatccgcaacggtctggatctgatcctttctggcgataccggcagtagcacg
atttcgctgctaaaaaacaaagcgctgcctgtaggcacgctgttgctggagctgatttac
gtggttgaagcacaggcaccgaagcagttgcaactcaaccgcttcctgccgccgacacca
gtgcgtatgctgctggataaaaacggcaacaacctggcggcgcaggtagagtttgaaacc
ttcaaccgtcagcttaacgcagtgaatcgccacaccggtagcaagctggttaacgctgtg
cagcaagaggttcacgccattctgcaactgggcgaagcgcagattgagaagtctgcccgt
gcattgattgatgcggcacgtaacgaagccgacgaaaaactgtctgcggaactgtcgcgt
ctggaagcactgcgcgcggttaacccgaacattcgtgacgacgaactggctgccattgag
agcaaccgtcagcaggttatggaaagtctggatcaggcaggctggcgtctggatgccctg
cgtttgatcgttgtaacgcatcagtaa
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