Escherichia marmotae: C1192_14155
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Entry
C1192_14155 CDS
T05353
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
ema
Escherichia marmotae
Brite
KEGG Orthology (KO) [BR:
ema00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ema03019
]
C1192_14155
Messenger RNA biogenesis [BR:
ema03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C1192_14155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
GDPD
Motif
Other DBs
NCBI-ProteinID:
AUT28121
LinkDB
All DBs
Position
complement(2740002..2741942)
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQAVATAIDTHLVSNDFST
LRPQISELMMSADIVRVDLLHDKKQVYTQSRNGSYRPVGTSDLFRELTVPLIKHPGMSLH
LVYQDPMGNYFHSLMTTAPLTGAIGFIIIMLFLAVRWLQRQLAGQELLETRATRILNGER
GTNVLGTIYEWPPGASSALDTLLCEIQNAREQHSRLDTLIRSYAAQDIKTGLNNRLFFDN
QLAMLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHSQVEEQLFTLTNLLSTFMMRYPGAL
LARYHRSDFAVLLPHRTLKEAESIAGQLIKAVDTLPSNKMLDRDDMIHIGICAWRSGQDT
EQVMEHAESATRNAGLQGGNSWAIYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAV
TREGQVHHRELMCRIFDGNEEVSSAEYMPMVLQFGLSEEYDRLQVSRLIPLLRYWPQENL
AIQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIIELAEADVGQHIGRLQPVIRLVNALG
VRVAVNQAGLTLVSTRWIKELNVELLKLHPGLVRNIEKRTENQLLVQSMVEACSGTNTQV
YATGVRSRSEWQTLIQRGVLGGQGDFFASSQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgagattaacgacgaaattttcggcctttgtcacgctgctcaccgggttaacaattttt
gtgactctgctgggctgctcgcttagtttctacaacgccattcagtataagtttagtcat
cgtgttcaggcagtggcgacggcgatcgatacccatcttgtgtcgaatgacttcagcaca
ttgaggccacaaatcagcgaactgatgatgtcggcggatatcgttcgcgtggatcttttg
cacgataaaaaacaggtttatacccagtcccgcaatggcagctaccgtccggttggtact
agcgatctgtttcgcgagctgactgtaccgttgattaaacatccggggatgtctctgcat
ttggtgtatcaggacccgatgggcaactatttccactcgctgatgaccactgcaccgctc
actggtgcgattggatttatcattattatgctcttcctggctgtacgctggttgcaacgg
caacttgccgggcaagaactgctggaaacccgtgccactcgtatcttaaacggtgagcgc
ggcacgaatgtgctgggcaccatctatgaatggccgccaggggccagcagtgcactggat
acgctgctttgcgaaattcagaatgcgcgcgaacagcacagtcgtctcgatacgctgatt
cgttcctatgctgcgcaggatattaaaactggcctcaataaccgcctctttttcgacaac
caactggcaatgttactggaagatcaggagaaagtagggactcacgggatcgtgatgatg
atccgcctgccggatttcaatatgttgagcgacacctgggggcacagtcaggttgaagaa
caactctttaccctgacaaatttgttatcgacatttatgatgcgctatccgggggcgctg
ctggcgcgttatcaccgtagcgattttgccgtgctgttgccacaccggacattaaaagag
gcggagagcattgccgggcaattgatcaaggcggttgataccttaccgagtaataaaatg
ctcgatcgtgatgatatgattcacatcggcatctgtgcctggcgtagtgggcaggatacc
gaacaggtgatggaacatgctgaatccgctacgcgcaatgcgggattacaaggcggcaac
agttgggccatttacgatgactcgttacctgaaaaagggcgcggtaacgttcgttggcgt
acgctcattgagcaaatgcttagccgcggcggcccgcgtctttatcagaaaccggcggtt
acccgtgaggggcaggttcatcaccgcgagctgatgtgccgcatctttgatggtaatgaa
gaggtcagctcggcggaatatatgccgatggtgttgcagtttggcttatcggaagagtat
gaccgcctgcaagtcagtcgcctcatcccgctgctacgctattggccgcaagaaaatctg
gcgattcaggtcaccgttgagtcgttgattcgtccacgtttccagcgttggctacgcgat
acgttgatgcaatgtgaaaaatcgcaacgaaaacgcataattattgaacttgcagaggct
gatgttggtcaacatatcggtcgcttgcaacctgttattcgtttagtgaatgctttaggg
gttcgggtcgccgtcaaccaggccggattgacgctggtaagtacccgttggatcaaagaa
cttaatgttgaattactcaagctccatccggggctggtaagaaacattgagaagcgaaca
gagaatcaattgttggttcagagcatggtagaagcgtgttccgggaccaacactcaggtt
tacgctacgggcgtacgttcgcgaagcgagtggcagaccctgattcagcgcggggtttta
ggtggacagggggattttttcgcgtcctcacagccacttgatactaacgtgaaaaaatat
tcacaaagatactcggtttaa
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