KEGG   Escherichia marmotae: C1192_16475
Entry
C1192_16475       CDS       T05353                                 
Name
(GenBank) DNA helicase II
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
ema  Escherichia marmotae
Pathway
ema03420  Nucleotide excision repair
ema03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ema00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    C1192_16475
   03430 Mismatch repair
    C1192_16475
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ema03400]
    C1192_16475
Enzymes [BR:ema01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     C1192_16475
DNA repair and recombination proteins [BR:ema03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     C1192_16475
   MMR (mismatch excision repair)
    Other MMR factors
     C1192_16475
SSDB
Motif
Pfam: UvrD_C UvrD-helicase AAA_19 AAA_30 UvrD_C_2
Other DBs
NCBI-ProteinID: AUT28530
LinkDB
Position
complement(3190100..3192262)
AA seq 720 aa
MDVSYLLESLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAV
TFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQL
RLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRAHHIQSYGNPVEQTWQKVYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDT
GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENN
NGRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQS
RVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGD
RTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQ
TDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAAL
EAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMG
TPLADNDSGYKLGQRVRHAKFGEGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYARLETV
NT seq 2163 nt   +upstreamnt  +downstreamnt
atggacgtttcttacctgctcgaaagccttaatgacaaacagcgcgaagcggtggccgcg
ccacgcagcaatcttctggtgctggcgggcgcgggcagtggtaagacgcgcgttctggtg
catcgtattgcgtggctgatgagcgtggaaaactgctcgccgtactcgattatggcggtg
acgtttaccaacaaagcggcggcggaaatgcgccatcgcatcgggcaattgatgggcacc
agccagggcggcatgtgggttggcaccttccacgggctggcgcaccgcctgctgcgtgcg
caccatatggacgctaacctaccgcaggatttccagatcctcgatagcgaagaccaactg
cgcctgctcaagcgtttgatcaaagcgatgaacctcgacgagaagcagtggccgccgcgc
caggcaatgtggtacatcaacagccagaaagacgaaggcctgcgggcgcatcatattcag
agctacggtaacccggtagagcaaacctggcagaaggtttatcaggcgtatcaggaagcg
tgtgaccgcgcgggcctggtggacttcgctgaactgctgctgcgcgcccacgaactgtgg
cttaacaagccgcatatcctgcaacactaccgcgaacgttttaccaatatccttgtggac
gaattccaggataccaacaacattcagtacgcgtggatccgcctgctggcgggggatacc
ggcaaagtgatgatcgtcggtgatgatgaccagtcaatttatggctggcgcggcgcgcag
gtcgagaatattcagcgtttcctcaatgatttcccaggtgccgaaactattcgtctggag
cagaactatcgctccaccagtaacattctgagcgccgccaacgccctgattgaaaacaac
aatggacgcttaggtaaaaaattgtggaccgatggcgcggacggtgagccgatttccctt
tattgtgcctttaacgaactcgacgaagcgcgttttgtggttaaccgcatcaaaacctgg
caggacaatggcggggcgctcgctgagtgcgccattctctaccgtagcaacgcccagtcg
cgtgtgctggaagaggccttattgcaggccagtatgccgtaccgtatttatggcggtatg
cgcttcttcgaacgccaggaaatcaaagatgcgctctcgtatctgcgcctgattgccaac
cgtaacgatgacgcggcatttgagcgcgtggtgaatacgccaacgcggggtattggtgat
cggacgctggacgtagttcgccagacatcgcgcgatcgccagctaactctctggcaggcg
tgtcgtgaactgttacaggaaaaagccctcgctgggcgcgctgccagcgccttgcaacgg
tttatggaactgattgacgccttagcgcaagaaactgccgatatgccgctgcatgtacag
actgaccgggtaattaaagactctggcctgcgtaccatgtatgaacaggagaaaggcgaa
aaaggccagacgcgtattgaaaacttagaggaactggtgacagcaacgcgccagttcagc
tacaacgaagaagatgaagatttaatgccgctgcaggctttcctctcgcatgcggcactg
gaagcgggtgaagggcaggcggatacctggcaggatgcggtgcagttgatgactttgcac
tcagcgaaagggctggagttcccgcaggtatttatcgtcggtatggaagagggaatgttc
cccagccagatgtcgctggatgaaggtgggcgtctggaagaagaacgtcgtctggcctac
gttggggtaacccgtgcgatgcagaaactgacgctgacctatgcggaaactcgccgtctg
tatggcaaagaggtttaccatcgcccgtcgcgctttattggtgagctgccggaagaatgt
gtggaagaggtgcgattacgcgctacggtgagtcgtccggtcagtcatcagcgtatgggt
acgccactggctgataacgacagcggttacaaactcggccagcgtgtgcgccatgccaag
tttggtgaagggactatcgtcaatatggaaggcagcggcgagcatagccgcctgcaggtg
gcgttccagggccagggtattaaatggctggtggcggcttacgcccggctggagacggtg
taa

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