Escherichia marmotae: C1192_17455
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Entry
C1192_17455 CDS
T05353
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ema
Escherichia marmotae
Pathway
ema03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ema00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C1192_17455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ema03400
]
C1192_17455
Enzymes [BR:
ema01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C1192_17455
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C1192_17455
DNA repair and recombination proteins [BR:
ema03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C1192_17455
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AUT28700
UniProt:
A0A370VCS6
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All DBs
Position
3376994..3377803
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AA seq
269 aa
AA seq
DB search
MPELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRLSDQPVLSVQRRAKYLL
LELPEGWIIIHLGMSGSLRILTEERPPEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTKEL
EGHNVLAHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAG
IHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRK
GEPCRVCGTPIVATKHAQRATFYCRQCQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaagttgaaaccagccgccgcggcattgaaccgcatctcgttggc
gcgaccattcttcatgcggtggtccgcaacgggcgtttgcgctggccagtctcggaagaa
atctaccgtctaagtgaccagccggtgcttagtgtgcagcgccgcgctaaatatctgttg
ctggaattgccggaaggctggatcatcattcatctgggtatgtctggcagtctgcgcata
cttacggaagaacgtcctcctgaaaagcatgaccatgttgatttggtgatgagcaacggc
aaagtgctgcgatataccgatcctcgtcgctttggtgcctggttgtggaccaaagagctg
gaaggacacaatgtgttggcacatcttggaccggagccgcttagcgatgatttcaacggc
gaatacctgcatcagaaatgcgcgaagaaaaagacagcgattaaaccctggctgatggat
aacaagctggtggtgggcgtggggaatatctatgccagcgagtcactgtttgctgcgggg
atccatccggatcggctggcgtcatcgctgtcgctggcggagtgcgaactgctggcacgg
gtgattaaagcagtgttactgcgttctattgagcagggcggcacgacgctgaaagatttt
ctgcaaagcgacggaaaaccaggttatttcgcgcaggaattacaggtttacgggcgtaaa
ggcgaaccgtgtcgggtttgtggtacgccgattgtggcgactaaacatgcgcagcgggcg
acattttattgccgacagtgccagaagtaa
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