Escherichia marmotae: C1192_21475
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Entry
C1192_21475 CDS
T05353
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ema
Escherichia marmotae
Pathway
ema03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ema00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
C1192_21475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ema03400
]
C1192_21475
Enzymes [BR:
ema01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
C1192_21475
DNA repair and recombination proteins [BR:
ema03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C1192_21475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
BscB_a-b
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AUT29392
LinkDB
All DBs
Position
4211560..4215102
Genome browser
AA seq
1180 aa
AA seq
DB search
MSDVAETLDPLRLPLLGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL
VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYARLLEEIDDKAQAAQWLLLAERQ
MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA
QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV
GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA
GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS
ALCSESGEALATAIRTRFPVAMIDEFQDTDPQQYRIFRHIWHHQPETALLLIGDPKQAIY
AFRGADIFTYMKARSEVHAHYTLDTNWRSALGMVNSVNTLFSQTDDAFMFREIPFIPVKS
AGKNQALRFVFKGETQPSMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGDALL
MNGDDARPVRASDISVLVRSRQEAAQIRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL
QAVMTPERENTLRSALATSMMGLNALDIEMLNNDEHAWDAVVEEFDGYRQIWRKRGVMPM
LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS
NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDRHSFEAVLDL
NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR
LLQKGEPKDAAGLRACIEALCDEDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN
WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFE
DLDFTQPVEPDWVREKLELGGFEAHWEPVLTEWIMAVLQAPLNETGVSLSQLSARDKQVE
MEFYLPISEPLVASQLDALIRQFDPLSAGCPSLEFMQVRGMLKGFIDLVFRHEGRYYLLD
YKSNWLGENSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYERHFGGVIY
LFLRGVDKEHPQQGIYATRPDAGLIALMDEMFAGMTLEEA
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgtcgctgagacactagatcctttgcgcttgcccttactgggtgagcgcctg
attgaagcctctgccggcacaggcaaaacctttacgatagcagcgctctatttgcgcctg
ttacttggactaggtggttctgctgcctttccccgcccgttgaccgttgaagaactgctg
gtggtgacctttaccgaggctgccaccgcagagttgcgcggtcgtatccgtagcaatatt
catgagttgcgcatcgcctgtctgcgtgaaaccaccgacaaccctctgtatgcgcgcctg
ctggaagagattgacgataaagcgcaggccgcgcagtggctgctgttagccgaacgacag
atggatgaagcggcagtttttaccattcacggtttttgtcagcgaatgctcaacctgaat
gcttttgaatccggtatgttgtttgagcagcaactgattgaagatgaatcgctactgcgc
taccaggcctgcgccgatttctggcgtcgccactgctatcctctgccgcgtgaaattgct
caggtggtctttgaaacatggaaagggccgcaggcgttgctgcgcgatattaatcgatat
ctgcaaggggaagcgccagttattaaagcgccgccgcccgatgatgaaacgctggcttcc
cgccacgcgcaaattgtggcgcgtatcgataccgtaaaacagcagtggcgtgatgcggta
ggtgaactggatgcgctaatcgaatcttcaggtattgatcgacgcaagtttaaccgtagc
aatcaggctaaatggattgacaagattagcgcctgggcagaagaagagaccaacagttat
cagttgccggagtcgctggaaaaattctctcagcgtttcttagaagatcgcacaaaagca
gggggcgagacaccgcgccatccgctgtttgaggcgatcgatcaattacttgccgaacca
ttatcgatccgcgatctggtgatcactcgcgcattagctgagatccgtgaaacggtagcg
cgtgaaaaacgccgccgtggcgaactgggttttgacgacatgttaagtcggctggattcc
gcgttgtgtagcgaaagcggagaggcgctggcgacggcgatccgcacgcgattcccggtg
gcaatgatcgacgagtttcaggataccgaccctcagcagtaccggattttccgccacatc
tggcaccatcagccggaaaccgcattgttactgattggtgatccgaaacaggctatttat
gcgttccgtggtgcggatatcttcacctacatgaaggcgcgtagcgaagttcacgctcat
tacacgttggataccaactggcgttccgcactaggaatggtgaacagtgtgaacacgctt
tttagccagactgatgacgcttttatgtttcgcgaaataccgtttattcctgtgaaatca
gccgggaaaaatcaggcgctgcgtttcgtatttaaaggtgaaacgcagccttcgatgaaa
atgtggctgatggaaggcgaaagctgcggcgttggcgattatcaaagtaccatggcgcag
gtatgcgccgcgcaaatccgcgactggctgcaggccgggcagcgcggagacgcgttgttg
atgaatggcgatgacgcgcgtccggtgcgtgcttcagacatcagtgtgttggtgcgcagc
cgccaggaggccgcccagatacgtgatgccttaacgctgctggaaatcccttccgtttac
ctttcgaaccgcgacagtgtttttgaaactctggaagcgcaggagatgctttggctgttg
caggcagtgatgacgcctgaacgtgaaaatactctgcgtagcgcgctggcaacgtcaatg
atggggctgaacgcgctggatatcgaaatgctgaataatgacgaacatgcctgggatgca
gtcgttgaagagttcgatggttatcgacaaatctggcgaaaacgcggcgttatgcctatg
ctgcgggcgctgatgtcggcgcgcaacattgcagaaaacctgctggcaacggcgggtggt
gagcggcgtcttacagatattttacatatcagtgaattacttcaggaagcgggaacgcag
cttgaaagtgaacatgcgctggtacgctggttatcacagcatatcctcgagccagacagt
aacgcgtccagccagcaaatgcgcctcgaaagtgacaaacatctggtgcagattgttacg
atccacaagtcgaaaggactggagtatccgctagtctggttgccatttattaccaatttc
cgcgtccaggatcaggcgttctatcacgatcgtcactcatttgaggctgttctggatctt
aacgctgcgccagaaagcgtcgatctcgctgaggccgaacgtctggcggaagatctgcgt
ttgctttatgtggcgctgacgcgttcggtctggcattgcagtcttggcgtcgcgccactg
gtgcgccgtcgaggcgataaaaaaggtgacaccgacgtccatcaaagtgcgctcggacgc
ttgctgcaaaaaggggaaccaaaggatgcggcaggacttcgcgcctgtattgaagcattg
tgcgatgaggatattgcctggcaaacggcacaaaccggtgataatcagccctggcaggtt
aatgatgtttctacagcagaactgaatgcgaagacgttacaacgtttacctggcgataac
tggcgggtcaccagctactctggtttgcagcagcgtggtcacggtatcgctcaggatttg
atgccacggctggatgttgacgccgcaggtgtggtcagcgtcgttgaagaaccgacgtta
acaccgcatcagtttccgcgcggagcgtcaccggggacgttcttgcacagtttgtttgag
gatctggattttacccagccggttgagcctgactgggtgcgggaaaaactggaacttggc
ggttttgaagcgcattgggaaccggtgttgaccgagtggatcatggctgttctccaggca
ccgctcaatgaaacgggagtcagcctgagtcagctttccgcccgcgataaacaggtggag
atggaattttatctgccaattagtgaaccgctcgtcgccagccaacttgatgcgctaatc
cgccagtttgacccgctttctgctggctgcccgtcgctggagttcatgcaggtgcgtggc
atgttaaaaggctttatcgacctggtgtttcgccacgaagggcgttattacctgctcgac
tataaatccaactggctgggtgaaaacagctcagcatacacccaacaggctatggcagcg
gcgatgcaagcacaccgctatgatctgcaatatcagctttataccctggcattgcatcgt
tatctgcgccatcgcattgctgattacgactatgagcgccactttggcggcgttatctat
ctgttcctgcgcggcgttgataaagagcatccgcaacaagggatttacgcgacccgcccc
gatgccgggttgattgccctgatggatgagatgtttgctggtatgaccctggaggaggcg
taa
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