Eleginops maclovinus (Patagonian blennie): 134858639
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Entry
134858639 CDS
T09869
Symbol
msh6
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
134858639 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
emac03400
]
134858639 (msh6)
DNA repair and recombination proteins [BR:
emac03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
134858639 (msh6)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
134858639
NCBI-ProteinID:
XP_063730694
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Position
22:11280720..11288145
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AA seq
1381 aa
AA seq
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MAKQSSLFNFFTKSPPPASKSKTSPSPTEADLPSSVEKSNSSPKEQAKQTPPEQQQQQPA
KTNKVKVKSKDNSSKGGFSKLFGDKAATTKQSINTCSFSAGDLVWAKLEGHPWWPCMVVP
QPLSGQQMRGRGRAQRIHVHFFDEPATRGWVSTKYVRDYQGSDSSDAKIGGLFFSGKPVI
RHAMELADGVMCDSPDKRLKMPFCMDPSDDEDEEMELGESALTDEEFSDEEEPNNETVKS
AKVSLRSSRASTESGNKAKRRRIVVASDSDGSDEEFKPQQAASSSEDEGEEGTVSSDEDE
GEITNDSEVESPIKPAKRKRPEEKSASTKAKIPTTPSNAPKRLPAAVADDTKSRLSAFSA
PDNFESQANGSGTGVSATIWDHEKLEWLQDGRRKDSRRRRQSEDGYDPTSLYVPEDFXNR
TTPGMRRWWQIKSEMFDTVIFYKVGKFYELYHMDAVIGVNEMALTFMKGTWAHSGFPEIG
FARFSDVLVQKGYKVARVEQTETPEMMEARCKKMAKPTKFDRVVKREVCRIITRGTQTYS
VLDGAPSESQSKFLLSLKEKAEEESSGRCRMYGVCFVDTSVGYFHVGQFPDDRHCSRLRT
LIAHFAPAEVLFEKGNPSVETRKILKASLSHALQEGLNAGTQFWDAQKTLKNLSEEDYFR
ETAGKDQGKGNNILPALLKKMTSEADSLGLTPKEGYELGLSALGGCVFYLKKCLVEHELL
SLANFEEYVPVDVELEKAAGAASFFARTRQRMVLDGVTLANLEIFQNGLGGTEGTLLERL
DTCSTPFGKRLMKQWLCAPLCNPSSIQDRLDAVEELMAAQAQATEVSDLLKKLPDLERLL
SKIHSIGTPLKGKDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIITVLAPVAGSS
QSKLLHQVVSLKGDKDGLFPDLSAELKRWDKAFDHNKARTTGVITPKAGFDPEFDEALSS
IKNCEQELQDYLDRQKKRLGCKTMSYWGTGRNRYQMEVPDSVSERNIPEEYDVKSTKKGW
KRYVTKESERLFSELQGYEEKRDAALKDCMRRLFYNFDKNYGDWKTGVECMAVLDVLLAL
SRYSQGGDGSMTRPQVVLPEGDDQVAPFLDLTGSRHPCVTKTFFGDDFIPNDVYIGCPGS
SEAAEENGQASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRYTPVDRVFTRL
GASDRIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVKELAE
KICCRTLFSTHYHSLVEDYANNPAVRLGHMACMVENECEDPSQETITFLYKFITGACPKS
YGFNAARLASLPEEVIQSGHRKAQEFEKSTISLRLFKKLCQFAEDVSVGNFASLVQMLNT
L
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctctcttttcaattttttcaccaagtctccgccgccggcctccaag
tcgaagacgagtccctctccaaccgaggcggacctgccttcctccgtagagaagtcaaac
tcctctccaaaggagcaagctaaacaaacaccaccagagcaacaacaacaacaacctgca
aagaccaacaaagttaaagtgaagagtaaagacaattcctctaaaggagggttcagcaaa
ctgtttggagacaaggccgcaacaaccaaacagagcatcaacacatgctcattcagtgct
ggcgaccttgtgtgggcaaaactggagggacacccctggtggccatgcatggtggtaccc
caacctttgagcggacagcagatgaggggcaggggtcgggcccaacgcattcacgtccac
ttctttgatgaacccgctactagaggatgggtcagcaccaaatacgtccgagattaccaa
ggctctgacagcagtgacgctaaaataggcgggttgttcttcagtggcaaacctgtgatc
cgccatgcaatggagctcgctgatggagttatgtgcgacagtccagataaaagattaaag
atgcctttctgtatggatccctctgatgatgaggatgaagaaatggagctaggtgagtct
gccttgactgatgaagagttctctgatgaggaagaaccgaacaatgagacagtgaagtcg
gccaaagtcagtctacggtcttcccgagcttcaacagaaagtggaaataaagccaagcgc
cgccgcatagttgtagcttcagatagtgatggatcagacgaggaattcaaaccacaacag
gctgcgtccagcagcgaggacgagggggaagaaggaacggtgagcagtgacgaggacgaa
ggcgagatcaccaatgattcagaagtagaaagcccaatcaagcctgcaaagcgcaaacgt
cctgaagaaaagtctgcttcaacaaaagctaagataccaactactccgtctaacgcaccg
aagcgccttccagcagctgtcgcagacgacacaaagtctcgtctgtcggccttctctgcc
cccgacaactttgagagccaggcaaatggatcaggcaccggtgtgagcgccaccatttgg
gaccacgagaagctggagtggttgcaagacggtaggaggaaagacagccgaaggcggcgt
cagtctgaggacggctatgatcccacgtcactgtatgtgccggaagacttcntcaacaga
accactcctggaatgcgtcggtggtggcagatcaaatctgaaatgtttgatacagttatt
ttctacaaggtggggaagttttacgagctctaccacatggatgctgtcatcggagtcaac
gagatggctctgacgttcatgaaggggacctgggcacactcaggcttcccagagatcggc
tttgcgcgtttctcagatgtactggttcagaaaggctacaaggtggcccgtgtggagcag
acagagaccccagagatgatggaagcgcgctgtaagaaaatggctaaacccacaaagttt
gaccgcgtggtgaaaagagaagtgtgccgcattatcacacgtggcacccaaacctacagc
gtgctggacggggctccctccgagagtcagagcaagttcctgttgagtttaaaggagaag
gctgaagaggagagctcggggcgctgccgtatgtacggggtctgctttgtagatacctct
gtgggttatttccatgtcggtcagttcccagacgatcgtcactgctcccgtttgcgcacc
ctgatagcacactttgcccctgctgaagtgctctttgaaaaggggaacccatctgttgaa
acgcgcaaaatacttaaagcctctctgtcccatgctctgcaggaagggctcaatgcaggc
acacagttctgggatgctcagaagactctgaaaaacctctctgaagaagattactttaga
gagaccgctggcaaggatcaggggaaaggaaacaacattcttcctgctcttctaaaaaag
atgacgtccgaggctgattcactgggccttactcctaaagagggttatgagctgggactg
tcggcactgggaggatgtgttttctatctgaaaaagtgcctggtagaacacgagctgctc
tctttggccaactttgaagaatatgtccctgttgatgtcgagctggagaaagctgcagga
gctgccagtttctttgccaggactcgtcagcggatggtccttgacggagtaactttggca
aacctggaaatctttcagaacggcttaggaggaacagaagggacgctgctggagcgcttg
gacacctgctctactccgtttggcaagaggttgatgaagcagtggctctgcgctcctctg
tgtaacccgtcatccatccaggacagactggacgcagtggaggagctgatggcggctcag
gcccaggctactgaggtttcagacctgctgaagaaactcccagatttggagcgtcttctg
agtaaaatccacagcatcggcactcctctgaagggcaaggatcaccctgacagccgagcg
gttctctatgaggaggtcacctacagcaagcgcaagatcgcagacttcctctcagcactg
gaaggtttcaaaacgatgcaagagatcatcactgtcctcgctccagtcgcaggcagctct
caatccaagttgctccatcaagtcgtcagccttaaaggtgacaaggacggcctctttccc
gatctctccgctgaacttaaacgatgggacaaagcctttgaccacaataaagcccgcacc
accggggttataactcccaaagccggctttgacccagagtttgacgaggctctgtcttcc
atcaagaactgtgagcaagagctgcaggattacctggaccgacagaagaagaggcttggc
tgtaaaaccatgtcctactgggggaccgggcgaaaccgctaccagatggaggtgcccgac
agtgtctcggaaaggaatattccggaggagtacgatgtgaagtctacaaagaaaggctgg
aagcgttacgtgacaaaggaatcggagcggctgttctcagagctgcaaggatacgaggag
aagagagacgctgccctgaaggactgcatgaggaggctcttctacaacttcgacaagaac
tacggagactggaagactggtgtggagtgcatggcagtgctcgatgtgctgctggccttg
tcccgctacagtcagggtggagacggctcgatgacccgcccacaggtggtgctccctgag
ggtgatgaccaggtggcgcccttcctggacctcacaggatcccgccacccctgtgtcacc
aagaccttcttcggggacgacttcatccctaacgacgtctacatcggctgccctggcagc
agtgaggctgctgaggagaacgggcaggcctcctgtgtcctcgtcactgggccaaacatg
gggggaaagtctactctcatgagacagtgtggacttgtaatcatccttgctcagctgggt
tgctacgttcccgccgagagcctgcgctacacgcctgtcgacagagtgttcactcggctg
ggagcctcagatcgtatcatggctggagagagtaccttctttgtggagctcagtgagact
gccagcatcctgcaccatgccactaaacactctcttgtgcttcttgacgaattaggaagg
ggcacagccacatatgatggcacagcaattgccagtgctgttgtaaaggagcttgctgag
aagatctgctgtcgcacactcttctccacacattaccactccctggtggaggactacgcc
aacaaccccgctgtgcggctgggccacatggcgtgcatggtggagaatgaatgtgaggat
ccgagtcaggagaccatcacattcctctacaagttcatcaccggtgcttgtccgaagagt
tacggcttcaacgctgctcgcctcgccagcctgccagaggaggtcatccaatcaggacac
aggaaggcccaggagtttgagaaaagcaccatcagccttcgactcttcaagaagctctgc
cagtttgctgaagatgtttctgtgggcaactttgcatcactcgttcagatgctcaacacc
ctgtag
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