Eleginops maclovinus (Patagonian blennie): 134858795
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Entry
134858795 CDS
T09869
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134858795 (col17a1b)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
134858795
NCBI-ProteinID:
XP_063730992
LinkDB
All DBs
Position
22:16440415..16465218
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AA seq
1914 aa
AA seq
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MDELTRQIDFSGGLSGERVVTETVTSTTRLSSLPPKGTSGSNHRNMSSSAGGLGLEKNVL
TQNSSGTYFSSSSVGVNTSSFSSSSGVYLGGDSSGIDGGGIFIDGEGYGGGGGGGGGRGG
GGRGGGGGGGGGVTGGGGGGVGGGGRSGGGSYLVSSVSKVRSSSSGGTRRTQTAGSSGLS
PTFRERKTISSRSGGYDGSSSANSSPEFSRKDYGVYCSSTTRGRSESRESEIRARLQSAS
PSASRWTELDDVKKLLKGRSCSVSPTRSSASITLPVPKKASVETKTISVASQSGSYGSGV
RSAGFHTIDTSGFYDAGLTSGRVDTGVNSSQYDVTVTSDQYDTGVKPGQYAVGLKSGQFD
TGVKSSQYDVTVKSGQYDTGVKSGQYDIGLKSGQYDTGIRSAQYDTGVRSAQYDGSLRSG
QYNGSGRSGQYDTLDATLPTFSWSTTTLPSASTTVIAANTSSYAYQAGNNNMSGGTAPVG
LTSPSSLSVYGFQNNLASTSPTVLTTSGGNVTANLGGYGVQKNLSNGGGVVSSGVSSTTR
TQADDSYKRDYKYLISDKENVAAKRDADMLIMAKDSGKQFTTSSVKMSGGSLSGDSIKKE
KLISSYVETAPLKTESGNSYYGSSGVVMKDKSTYAEIDRDSGIFGGGGGFCCCSDACCSW
WKWLLGLLLLSLLLLGLLFGLIALAEDVRKLKSRVATLESESSAASARTSRLSGTSNNIN
IYGATGAGAAGAAGAAGGFGTAAGAGSGGGRGTSHTDNTLYLGAGGASGSSGSKTQIGIT
GGAGGSTGGGNGLDVSIGGGSAGEGGASGTSGASGSSGASAGGAGTVLSGSAGSGGSGGS
TGTRVSGGAGSSSGTTYSGSAGSSGTVLSGSAGSTGTGFGGGTGSSSGTGFSGGTGFGTG
VSGGHMDAAAFQMMIQQMLRTEMHSQSYRAFLVSSVQGERGLPGPKGDSGFPGIPGAPGA
MGHAGPEGQKGQKGSQGDHGLDGTPGLRGRDGQTGPRGDAGPQGFGAKGDRGSPGEPGSV
GPKGSSGSPGLHGAPGQPGSQGFRGETGPPGPKGDRGLAGFQGLKGDTGETGPRGVKGDP
GVPGVQGPAGEKGSIGLSGADGLKGSRGDQGHAGIPGLRGPAGPPGDAAPPGPPGLQGPP
GIPGNPGRPGIKGETGEAGRIINAAGSSAVGIPGPPGPAGPPGQTGPPGLSGPIGPAGLP
GQPGAKGDRGFRGESGEQAITSRTSETLTSRQFNANGGSGIPGPPGPPGPPGRPGDSRQG
PPGPPGPSGYGRPGPKGDRGESGFSSSSGTFYTGPPGPPGPSGPKGSTGSPGPRGYQGEA
GQPGVHGTPGRSGSSVSSYGGGLGIPGPPGPPGLPGIQGIKGDTGAPGNPGSSRGSISVT
SGPPGPAGPPGPPGQPGSFSSSIEMRQYISEYLSRSTQSGLRGLPGPPGPPGIPGSFSGS
IEDISTRMIAYLQRSGSGLSIGVQGPPGPPGPPGHGSGSLTVSGLIAMLQREDVRRYLSG
PQGPQGPQGPPGQPGTSGSSGGFSGSFSVEEIATYVFKIMNDRGIARGPPGPPGPAGPSV
AVGSGFSTTSIDYSALVRNSDFRAWISSAVQQGLSGPPGTPGQPGPPGPQGPPGVSTATV
YGAGGSGYSLEDIQRYLQGSGFRGLPGPPGPQGPVGPPGSYSGSVSYSGNFGRESIRAEV
QQYLTSDNVRRTIIGPPGPPGPRGLKGERGESGYIQSRTQSHGQSNGQSNGQSNGQSNGQ
SQSQSQSQSQSYAQGDSRFGSEYRNIDVSNLDYSSVAIQVSDYIKSQGLLQEYLVEGPWR
AHVRAIQGPPGPPGPVGPPGQSRVIGAYGNVTADLMQFFRTYGTIAGPPGENGLRGERGY
PGPRGEKGDPGRPGLPGLPGSYAVQIPHRVQKRDAGNEMVARRRQKLRRHAGSG
NT seq
5745 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacaagacagatcgacttctcaggaggcttgtcaggagaaagggttgtg
acagaaacagtaacctccaccaccagactgtcttctctgccaccaaagggaaccagcgga
tcaaatcacaggaatatgtccagcagtgctggagggctgggtttggagaagaatgtctta
acccagaacagcagtggaacttatttctcctcatcctctgtgggagtgaacaccagcagc
ttcagctcctcctcgggagtttacctcgggggagactcctcaggaattgatggaggaggg
atcttcatagacggagagggatatggaggaggaggaggaggaggaggaggaaggggagga
ggaggaaggggaggaggagggggaggaggaggaggagtaactggaggaggaggaggagga
gtaggaggaggagggagaagcggcggcggaagttatcttgtgagttcggtgtcaaaggtc
aggtccagctcgtctggcggtaccaggagaactcagacagccggctcatcaggcctgtcg
ccaactttccgggagaggaaaacgatatccagccgctcaggaggttacgatggaagttcc
agcgctaattcctccccagagttttcacgcaaagattatggagtctattgctccagcacc
acaagagggaggagcgaaagcagagagagcgagatcagagccagattacagagtgcctct
cccagtgccagcagatggacggagctggacgacgtgaagaagcttctgaagggacgctcc
tgcagcgtcagcccgactcgctccagcgcctcaatcaccctgcctgtccctaaaaaggcc
agcgtggaaaccaagactatctcagtggcctctcagtcgggttcctatggctctggtgtt
agatcagccgggttccacaccattgatacatctggcttttatgacgctggtttgacatct
gggcgggttgatactggtgtaaactcaagccagtatgatgtcaccgtgacatcagaccaa
tatgatactggtgtgaaacctggccagtatgctgttggtttaaaatcaggacagtttgat
actggtgtaaaatcaagccagtatgacgtcactgtgaaatcaggccagtatgatactggt
gtgaagtcaggacagtacgacattggtttgaaatcaggacagtatgataccggcataaga
tcagcccagtatgataccggcgttagatcagcccagtatgatggaagtctgagatcaggc
cagtataatggcagtgggagatcaggtcagtatgacacactggacgccacacttcctact
ttctcctggtccaccaccacgctgccctcggcctccaccacggtgatcgctgccaacacc
agcagctacgcataccaggccgggaacaacaacatgtcgggaggaaccgccccagtcggt
ctcacctcaccctcctccctgtcagtttacggcttccagaataacctggcttccacctct
cccactgtgctcaccaccagtggaggaaacgtgactgctaacctaggaggttatggcgtt
cagaagaacttgtcaaatggtgggggagtcgtcagcagtggagtctcttcaaccactaga
acacaagctgatgattcatataagagagactataagtacctgatctctgacaaggagaac
gtggcggccaagagagatgcagacatgctgatcatggctaaagacagcgggaagcagttc
accaccagcagtgttaagatgagcggagggtcgctgtcaggagattcgataaagaaagag
aagcttatttccagctacgttgagacagcaccactgaagacagagtctggcaactcttac
tatgggtcatctggagttgtgatgaaagacaaatcaacctatgcagagatcgacagggac
agtgggatcttcggaggtggtggaggattctgctgctgctctgatgcgtgttgctcctgg
tggaaatggctgctgggtcttctcctcctgtccctgctcctgctgggactcttgtttggt
ctcattgcactggctgaggacgtgagaaagctgaagagtcgagtggctacgctggaatcc
gaatcctctgcggcctctgctcgtaccagccggctgtcaggaacttcgaataacatcaac
atctatggagccactggagctggagctgctggagctgctggagctgctggaggttttggg
actgctgctggtgctggtagtggaggtggtagaggtacctcccacactgacaacacgcta
tatctgggcgctggaggcgcatctggaagttcaggctccaaaacacaaatcgggataaca
ggtggtgctggcggctcaactggtggtggaaacggccttgatgtcagcataggaggtggt
tctgctggggaaggtggtgcaagtggaaccagtggagccagtggatccagtggagccagt
gctggaggtgccggtaccgttctcagtggcagcgctggcagcggtggcagcggtggcagt
actggtacccgtgtcagtggtggtgcgggaagttctagtggaaccacttacagtggttct
gctggtagttctggtaccgttctcagtggcagtgccggcagtactggtactggtttcggt
gggggcaccggcagttcttctggtaccggcttcagtggtggcactggcttcgggaccgga
gtgagtggagggcacatggacgctgccgctttccagatgatgatccagcagatgttaagg
actgaaatgcattcccagtcatacagagcttttctagtgtcatcagtgcagggagagaga
ggactgcctggacctaaaggagatagtggtttccctggaattccaggtgctccgggtgcc
atgggacatgcaggccctgagggtcagaaaggacagaaaggaagtcaaggtgatcatggg
ctggatgggacacctggcctcaggggtcgcgatggacagacgggccccagaggtgatgca
ggacctcaaggctttggagcgaaaggtgacagaggttctcccggggaacctgggtctgtc
ggccctaaaggctcgagtggatctcctggacttcatggagcaccaggtcaaccaggttct
cagggtttccgtggcgagacagggccacctgggcctaaaggagacagagggcttgctgga
ttccaaggacttaaaggtgacactggtgagacaggccccagaggtgtgaaaggtgatcct
ggtgtaccgggtgtgcaggggccggccggagagaagggatcaattggattgtctggagcc
gatggattgaaaggatcaagaggtgaccaagggcatgcaggtattcctggactcagaggt
cctgctggacctcctggagatgctgcacctccaggaccacctgggcttcaaggaccacca
gggataccagggaatccaggaagacccggcattaaaggggaaacaggtgaagctggaaga
atcatcaatgcagctggatcttctgctgtcggcatcccaggaccccctgggcctgctggt
ccccccggccagacaggacctcctggattatcaggtccaattggccctgctggtctgcct
ggccaacctggtgctaaaggtgacagaggatttaggggcgagtcgggagaacaagcaata
acatcaagaacgtctgaaaccttgacctcaagacagtttaacgccaatggaggatcagga
atacctggcccacccggcccacccggcccacctggacgtccaggtgactcaagacaagga
ccgcccgggcctccaggtccttcaggttatggaagaccagggcctaaaggagacagaggg
gaatctggcttttcatccagctcaggaacattttatactggaccgccaggaccacctggg
ccttctgggcctaaaggatcaacaggttctcctggaccaagaggctatcaaggtgaagca
gggcagccaggtgtgcatggaaccccaggaagatcgggtagctcagtatcctcttatggt
ggaggactcgggatccctggacctccaggtccgccgggacttcctggaatacagggaatt
aaaggggacacaggagctccgggtaatcctggctcttcaagaggctccatctcagtcacc
tcaggcccccctggccccgcaggtcctcccggccctccaggtcagccgggctccttctct
tcttccattgagatgcgacagtacatctctgaatatctgagtagaagcacacagtctggt
ctccgtgggctcccgggtccccctgggcctccaggaatccctggatccttctcaggctcg
atcgaggacatctccactcgtatgatcgcatacctacaacgttctggctcagggcttagt
attggggttcagggtcctcctggaccacctggccccccaggacatggctccggttccctg
acagtcagtgggctcatcgccatgcttcagagagaggatgtgaggaggtacctgtccgga
ccacaaggcccacaaggcccacaaggcccaccgggacaaccagggacttcagggtcatca
ggaggattttcaggcagtttcagtgtggaggagatagccacatatgtcttcaagatcatg
aatgacagagggattgctagaggtccacccgggccgcccggtccagctggtccgtctgtt
gctgtgggctccggcttctctacgacttcgattgactattctgcgctagtgagaaattca
gacttccgcgcttggatttcctccgccgtacaacaaggtctttctggtccccctggcacc
ccaggacagcctggcccccctgggcctcaggggccaccaggagtctccaccgccactgtg
tatggggctggaggaagtggatacagcttggaggacattcagcgttacttgcagggttct
ggcttcagaggtcttcctggccctcctggtccacagggaccagtgggtccaccaggcagc
tactccgggtcagtttcctacagtggaaactttggtcgggagagcatccgcgctgaagtc
cagcagtatctgaccagtgacaatgttcgtcgcaccatcatcggacctccgggtcctcca
gggcctaggggtctgaagggagagcgtggagagtcgggctacatccagagccgcacgcag
agccatggccagagcaatggccagagcaatggccagagcaatggccagagcaatggccag
agccagagccagagccagagccagagccagagctacgctcagggtgactctcgattcggc
tccgagtacagaaacatcgatgtcagcaacctggactactccagcgtcgccatccaggtt
tcagactacatcaagagtcaaggcctgctgcaggagtatctggttgagggtccttggagg
gcgcatgtaagagcgattcaaggccctcctggtccacctggccctgtcggaccaccgggc
cagagccgcgtcatcggggcctatggcaacgtcacagctgatctcatgcagttcttcaga
acctatggcaccatcgcgggccctcctggagagaatggactcaggggcgagaggggttat
ccaggaccgaggggagagaaaggtgatcctgggcgcccaggtttaccaggactaccaggg
tcatacgctgtccaaattccacacagagtgcagaagagggatgcaggcaatgaaatggtt
gctcgtcgtcgtcagaagcttcgccgtcacgcaggcagtggttaa
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