Eleginops maclovinus (Patagonian blennie): 134860058
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Entry
134860058 CDS
T09869
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03040
Spliceosome
emac04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134860058 (prpf19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
134860058 (prpf19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
emac03041
]
134860058 (prpf19)
04121 Ubiquitin system [BR:
emac04121
]
134860058 (prpf19)
03400 DNA repair and recombination proteins [BR:
emac03400
]
134860058 (prpf19)
Enzymes [BR:
emac01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134860058 (prpf19)
Spliceosome [BR:
emac03041
]
Complex B
Other components
Prp19 complex
134860058 (prpf19)
Complex C
Prp19-CDC5 complex
134860058 (prpf19)
Ubiquitin system [BR:
emac04121
]
Ubiquitin ligases (E3)
U-box type E3
134860058 (prpf19)
DNA repair and recombination proteins [BR:
emac03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
134860058 (prpf19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Prp19
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_RIG_2nd
PEP5_VPS11_N
Beta-prop_HPS5
U-box
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_Nup120_160
PROPPIN
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
RMC1_N
Cytochrom_D1
B-prop_COPA_B_2nd
Ge1_WD40
zf-Nse
DUF2518
ATG16
Motif
Other DBs
NCBI-GeneID:
134860058
NCBI-ProteinID:
XP_063732975
LinkDB
All DBs
Position
23:complement(14494215..14499833)
Genome browser
AA seq
505 aa
AA seq
DB search
MSLVCAISNEVPEHPCVSPVSSQVFERRLIEKYIAENGTDPMNGQPLSEEQLVDIKVSHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQAVPASQPNAAGAGGEPMEISEQVGMTPEIIQKLQDK
ATILTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILALDLCPSDTNKVLT
GGADKNVVVFDKSEEQIVATLKGHTKKVTSVIYHPSQSVVFSASPDNTIRVWSVAGGNCV
QVVRAHEGGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDESAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSVKLW
DLRKLKNFKTINLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTDHTGLVT
GVAFGENAQFLTSAGMDRSLKFYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggtttgtgcaatctccaacgaagtcccggagcacccgtgtgtctctccggtg
tccagccaggtgtttgagcgcaggctgatcgagaagtacatcgcagagaatgggaccgac
ccgatgaacggacaacccctatctgaggagcagctcgtagacatcaaagtgtctcatccc
attagaccaaaggctccatcagcaacaagcattcctgccatcctcaagtcccttcaagat
gagtgggatgctgttatgcttcacagcttcaccctgcggcaacagctgcagacgactcgc
caagaactgtctcacgccctctaccaacacgatgccgcctgccgagtcatcgctcgactc
accaaagaggtcactgctgcgagagaagctcttgccacactcaagccccaggctggattg
gtggctcctcaggccgtccctgcctctcagccaaatgccgcaggcgctggtggagagccc
atggagattagtgaacaggtcggaatgactccagagatcatccaaaagctccaagacaaa
gctactatcctcaccacagaaagaaagaagagaggaaaaactgtcccagaggagctggtt
agagctgaagatctcagcaaataccgccaggtggcctctcatgctggtcttcatagtgcc
agtgtccctggtattctggctctggatctgtgtccttcagacaccaacaaagttctcacc
ggcggagctgataagaacgtggtggtgtttgacaagagtgaggaacagattgtggccaca
ctgaagggtcacaccaagaaggtcacctctgtcatttaccatccatcccagtccgtggtc
ttctctgcgtctccagacaacaccatccgtgtgtggtccgttgccggggggaattgtgtt
caggtggtgcgtgcccacgaggggggtgtcactggactctcccttcacgctactggggac
tacctgctcagctcctctgaggatcagtactgggccttttctgatatccagactggtcga
gtcctcaccaaagttacggatgaaagtgcaggctgcgctctgacctgtgctcagttccac
cctgatggtctcatttttggcactgggacggctgattcccaaatcaagatctgggatctg
aaggagcgcaccaacgtggcaaacttcccaggccactctggccccgtcacttccattgcc
ttctctgagaacggatactatctggctacaggtgcccaggatagctctgtgaaactctgg
gatctgaggaaactgaagaacttcaagaccatcaatctggacaacaactatgaggtgaag
tcccttgtgtttgaccagagtggtacctacctggctgttggaggatctgacatccgggtc
tacatctgcaaacagtggtctgaggtcctcaacttcacagatcatacaggattggtgact
ggagttgcctttggagagaacgctcagttcctgacctctgcgggaatggacagaagtctc
aaattttacagtttgtga
DBGET
integrated database retrieval system
