| Entry |
|
|---|
| Symbol |
parn
|
|---|
| Name |
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN
|
|---|
| KO |
|
|---|
| Organism |
emac Eleginops maclovinus (Patagonian blennie)
|
|---|
| Pathway |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:emac00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134864094 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:emac03019]
134864094 (parn)
Enzymes [BR:emac01000]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
134864094 (parn)
Messenger RNA biogenesis [BR:emac03019]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
134864094 (parn)
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
5:complement(3754476..3764099)
|
|---|
| AA seq |
689 aa
MEVTRQNFKDSLKTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGLCTFTYDQTKSKYIIKPFNFYVFPKPFNRTSPDLKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQEEEAQLREQTEERRNQQANGINNQSFISPSSKGPAHVPQEHKDY
INRVIGKVEALFTGSEKTLDLEPCTGFQRKLIYQTLNWKFPKGLHVETVETEKKERFIQV
SKVDDEERKRREQQKLEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
LPLPEDLPDFKEVTMCVFPRLLDTKLMASTQPFKELINNTSLAELEKRVKEGPFKSPQVE
TAEGFHSYDTAQEQLHEAGYDAYITGLCFVSMANYLGSFLTPPKPHIAARSKLIDPFFNK
LFLMRIIDIPYLNITGPDLTPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTDQVQIAMNTSRYAESYKIQTYAEYIKGKQSKEKVGQTPKSWGEDGWNKPNYTP
ATTAGFGYPRGLGKRSISPVLGEPGTGDAMKTDGWSNYSYPDSTGSKRMKTDDKSGQANA
DAIESKTSEGWLKMADASDSAGSSPIPEEGEEEEEEEXEEEVEEGSPEGNDNEGTVTWQQ
APTSKGQKNKKKSKGTESSTSLFDVPEVW |
|---|
| NT seq |
2070 nt +upstreamnt +downstreamnt
atggaggtgacacgccaaaattttaaagacagtttaaagacggtttacagtgcgatagag
gaggctgacttccttgccatcgatggagaattttcagggataagtgacggtcctaatgtg
agtgcacttaccaatggcctggacacaccagaggagaggtacacaaagcttaaaaagcac
tccatggactttctgctgttccagtttggcttatgcacattcacgtacgaccagacaaag
tcaaagtatatcataaagccttttaatttttatgtattcccgaaaccgttcaacaggacc
tcccctgacttaaagttcatctgtcagagttccagcattgacttcctggccagtcagggg
tttgacttcaacaaggtgttctgtcatgggatcccgtacctgaaccaggaagaggaggcc
cagctgagggagcagacggaggagaggagaaatcaacaagccaacggtatcaataatcaa
tccttcatctctccatcctccaaaggcccagcacacgtacctcaggaacacaaggactac
atcaacagagtgatagggaaggtcgaggcgctcttcactggctcagagaagactttggac
ttggagccatgcactgggtttcagagaaagctgatctaccagactctgaactggaagttt
cccaaggggcttcatgtagaaactgtggaaacagaaaagaaggaacggttcatccaggtc
agcaaagtagatgatgaagagaggaagaggagggaacagcagaaactggagagggagcag
gaggagctaaatgacgccgttggcttctccagggtgatccacgccatctccaaatctggt
aaacttgtggttggccacaacatgctgttagatgtgatgcacaccatccaccagttctac
ctccctctgccagaggatcttccagactttaaagaggtcacaatgtgtgtgttcccgaga
ctcctggacacaaagttgatggcttccactcagccgttcaaggagctgatcaacaacaca
tctctggcagagttggagaagcgagtgaaagagggccccttcaagtccccacaagtcgaa
acggcagaaggcttccacagttacgacacggcccaggagcaactccacgaggccgggtac
gacgcttacatcaccggcctctgtttcgtctccatggccaactacctgggatcttttctg
actccacccaaaccacacatcgccgctcgctccaaactaatcgatccgttcttcaacaag
cttttcctgatgaggataatagatattccctacctcaacatcacaggaccagatttgacc
cctaaaagagaccacgtcctgtatgtcaccttccctaaagaatggaagaccagtgacctc
taccagctctttagtgcctttggaaacatccaggtatcctggatagacgacacgtcagcg
tttgtgtctctcagtcagacggatcaggtacagatagcgatgaacacaagccgctacgca
gagagttacaagatccagacgtacgcagagtacattaaggggaagcagagcaaggagaag
gtcggacagacgcccaaaagttggggcgaggacggctggaacaagccgaactacaccccc
gctacgactgctggctttggatatcccaggggtttggggaagcgcagcataagtcctgtt
ctgggggagccggggaccggagacgctatgaagacagatggctggagtaactactcgtac
cccgacagcacgggcagcaagaggatgaaaactgatgacaaaagcggacaagcaaatgcc
gacgccatcgagagcaagacctcagagggctggctaaagatggcagatgcatcagattca
gcggggtccagtccaatccctgaggagggggaagaagaagaggaagaagaangagaggag
gaggtggaggagggaagccctgaaggcaacgataatgaaggcacggtcacctggcaacaa
gcccccacatccaaaggtcaaaagaacaagaagaagtctaaagggactgaatcctccacc
tcgctgtttgacgtcccggaggtgtggtag |
|---|
