Eleginops maclovinus (Patagonian blennie): 134864364
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Entry
134864364 CDS
T09869
Symbol
col17a1a
Name
(RefSeq) collagen, type XVII, alpha 1a isoform X1
KO
K07603
collagen type XVII alpha
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134864364 (col17a1a)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
134864364
NCBI-ProteinID:
XP_063739352
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Position
5:18506991..18527128
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AA seq
1723 aa
AA seq
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MDNLITSTSVGSGGGGGGGGVGGSSRVVTKSVTTTRLTSQNDLSMNTGGSGEKAVSGSSG
GILITSSSSNAAGSGGYISSGTSSSGRTTSSSSNATSSGGYGSSGTSNSGFITSSSSNTA
SIGGYGSGETSSSALTTSSSSSAGNSGGYGSGGTSSSGFITSSSSNAASSSGYGSGGTSS
SGLTTSISSNAASSGGYGNSKSAGGISVTTLGASSAVSSGVGNSAISGGSGAATKGTAGA
VGFRATGKGSSGMSSGFVSGGRDGKRDGGLGAVTVSTMTKSSYSSGGSGEAKRGSSSAVT
YSPVPKEKKSTSTMAAAVSDVFYESSSTNSSPEYKRKEYGISSSTSSSATRGRTNSRESE
IRARLQSASPPASWTELDDVKRLLRGNRSTSTSPTRSPNNTLPIPKKASVETRTMSDSTA
TASANQMPEHYGSIWSGGVSSGYGYNTSSNNMSATSNLYSSGVQNNLTLSSPSMNGGLSA
GSTIPMYGLQNNLASTSPMALSATGANTQTVYGVQKNVSGSGIGTTTGRPSSPLHDESPG
KDFKFVLIEKENAPVKKETERLVMTKDTGKQFMPATTSAFFSGDSLQREKQKLSSSTMEE
RTDAKSATLKVATKDKATYAEISDSDSFFSFCSCCSWWKWLLGLLLSLLLLLGLLFGLIA
LGEEVKRLKNRVDALESITGTASARSSRLSASSGINIIDPLDSAYIERSSAGSTLTRSDN
GINLGAAGPRVDAGSGPGQDSATLQRTVQHLVRAELRSDALRDSLAYSLKGERGDPGVKG
DTGMLGQKGDGGFPGLPGPPGQIGHPGLDGPRGPKGSSGEPGSEGPQGQRGRDGQVGSRG
EAGPPGFGEKGDRGSQGEAGRPGLAGAPGPVGPKGSTGEQGSHGIPGAPGPKGFQGEVGA
PGVPGDRGAPGISGIKGDPGERGARGISGEPGQPGSQGPAGPKGSKGSGGESGSNGLPGA
RGSPGLPGDVGPRGDPGAPGKFIASAGSNAVAIPGPPGPAGPPGSAGTHGLSGPIGPAGL
PGRPGPKGDQGDQGEKGDKGEQGKPGEPGSVTSSESLGTDKLSSATNLPGPPGPPGPPGP
AGATGPQGPSGEGKEGPPGRRGPAGEPGVGLPGSPGEKGEPGSFVPTSETFFAGPPGPPG
PQGAAGVRGPEGFQGEPGQSGLPGSPGKPGHGFPGQPGPRGPEGQPGPEGPEGIPGAKGD
PGIPGAPGIPGVSVGGSYSPAASGPPGQPGPPGPPGPSGPPGRDGSGHMDVGTYLAEYLQ
SSSFSSGAPGPPGPPGPPGRDGTGSGSPDVGQYIAQYIQSDGVRQYLAGPPGPPGPPGAS
WPSSPAGDGLVDDVANRVIAYMQSQGRGYDRDPGPPGPPGPPGSISVNDVIAVLQREEVR
RYGAGTPGPPGPPGAPGHGSYRINTQEVAERVLTLLNERQVLGVPGPPGPPGLPGDSFQV
VGPQGHPGAPGVPGIPGREGPPGPPGSSNYINSDIRDYLQSVDFRGLPGPPGPPGPEGPP
RGLHGLVSFAEYANREPPTAEKQQYINDDSMRGTMFGLPGAPGPPGPPGHRGEPGEPGTK
DSILDTGDYSSVAVKVTDYIKSHGLLRDVGGNSERFVQGPPGPPGLPGMPGQSQLVSSRE
NIMDVVEYIKSQGLLRDLKQNHNDHGIQGPRGAPGPPGPPGLSQLFGSQENLIDLVEYIK
KNGSIVGPPGRPGQKGDIGFPGPKGDRGEYAPAVKRRKRNVRM
NT seq
5172 nt
NT seq
+upstream
nt +downstream
nt
atggacaatctaataacatccacgtctgtcggctctggtggaggtgggggtggcggaggt
gttggaggaagtagcagagtggtcacaaagtcagtgacaactactcgactgacatcgcaa
aatgatctctctatgaacacaggagggtcaggtgagaaagctgtgtcaggaagctctggg
ggaatcctgatcacatccagcagctccaacgccgctggctcaggtggatacatctctagt
ggaacaagcagctcaggccggaccacatccagcagctccaacgccaccagctcaggtgga
tacggctccagcgggacaagcaactcagggttcatcacatccagcagctccaatacggcc
agcatcggtggatatggttctggagaaacaagcagttcagccctgaccacatccagcagc
tccagcgcaggcaactccggtggatatggctcaggcggaacaagcagctcagggttcatc
acatccagcagctcaaatgctgccagctccagtggatatggctctggcggaacaagcagc
tcaggcctgaccacatccatcagctccaatgctgccagctccggtggatacggaaacagc
aagtccgcaggtggcatcagcgtcactactctaggtgcctcctctgctgtatcctcaggg
gttggaaattcagcaatctcagggggctcaggggcagcaacaaagggaactgctggggcg
gtggggttcagggccactgggaagggatcctctggcatgtcttctggttttgtgagtggg
ggcagagatggaaaaagagacgggggtctaggagccgtgacagtttcaacaatgacgaag
agcagttacagttcaggagggtctggggaggcaaagagaggatcgtcttcagcagtcact
tattcacctgttccaaaagagaagaagagcacgagcaccatggcagcagcggtctcagat
gtcttttacgaaagttcaagcacaaactcctctccagagtacaaaaggaaggagtatggt
atttcaagttctacttctagctctgccaccagagggagaactaatagcagagagagtgag
atcagagcaagacttcagagtgcttctcctccagcaagttggacggagctggatgacgtg
aagcgcctgctgagaggaaaccgctccaccagcaccagccccaccagatcccccaacaac
acgctgcctatccccaagaaggccagcgttgaaactaggaccatgtctgacagcaccgcc
acagcttcagccaatcagatgccagagcactatggcagcatttggtccggaggtgtgagc
agtggctacggttacaacactagctccaacaacatgtcggctacctccaacctttactca
tcaggagttcagaacaacctgacactcagctccccatcgatgaacggtggactctctgct
ggcagcactattcctatgtatggtcttcagaataacctggccagtaccagccccatggcc
ctctctgccaccggagccaacacacaaacggtttatggtgtccagaaaaatgtctctggt
agcggaatcggcacaaccacagggagacccagcagtcccctacacgatgagagcccaggc
aaagactttaagtttgtgctgatagagaaggagaatgctcctgtgaagaaggagaccgag
cggctggtcatgaccaaagacacagggaagcagttcatgcctgctactacttctgctttc
ttctccggggactccctacagagagagaaacagaagttatcatccagcacaatggaggaa
cgaacagatgctaaatctgcaaccctaaaagtggccacaaaagacaaagccacctacgca
gagatcagtgacagtgactcgttcttcagcttctgctcctgctgcagttggtggaagtgg
ctgcttggcctcctgctcagcctgctcctcctcctcggcctcctctttggactcatcgct
ttgggcgaagaagtgaaacgcctgaagaaccgtgtcgatgctctggaatccatcactggc
acggcatcggccaggtccagccgtttgtcggcctcctctggaatcaacatcatcgacccg
ctggactcggcgtacatcgaaaggagttctgctgggtctaccttgacccgctctgacaat
gggatcaacctgggagcagctggacctagagtagacgctgggagtggaccagggcaggac
agcgccaccctgcagagaaccgtgcagcatctggtcagggctgaactccgctctgatgct
ctgagagattcacttgcatactcactaaaaggggagagaggagacccaggagttaaaggt
gacacagggatgcttggacaaaaaggtgacggtggctttcctggcctgccaggccctcct
gggcagatagggcacccaggactggatggaccaaggggaccaaagggaagttcaggtgaa
ccaggctctgagggtccacaaggccagaggggccgtgatggacaagtgggctcccgtgga
gaagctggaccaccaggttttggagagaaaggagacagaggatctcaaggcgaggcagga
cgtcctggtcttgctggtgctcctggtcctgtggggccgaaaggttccacaggagagcag
ggttcccatggaattccaggtgctccaggtccaaaaggtttccagggtgaagtaggagca
ccaggagtgcctggtgatcgaggagcaccaggtatttcaggaatcaaaggggacccagga
gagagaggagcacgtggaatatcaggggaaccaggacaacctggatcacaaggccctgct
ggaccaaagggatctaaaggaagtggaggtgaatcaggctcaaatggacttcctggtgct
agaggatcacctggacttcctggagatgttggtcccagaggtgacccaggagcacctggt
aaattcattgcttcagctggctctaatgctgttgccatccccggaccaccagggcctgcc
gggcctccaggttctgctggaacccatggtctgtctggtcccatcggccccgccggtctc
ccaggacgacccggacctaagggagatcaaggagatcaaggagaaaagggagataaggga
gagcaaggaaaacctggcgagcctgggtctgtcacaagttcagaatccctcggaaccgac
aaactttcttcagctactaacctgcctggccctcctggtccaccaggacctccagggcct
gctggagcaactggtcctcaaggtccttctggtgagggtaaagagggtcctcccggacgc
agaggtcctgcaggagagccaggagttggtcttcctggatctccaggagaaaaaggagaa
ccagggagttttgttcctacctcagaaaccttttttgctggaccaccaggacccccgggc
ccacagggtgcagcaggtgttcgaggaccagaagggttccaaggagaaccaggtcaatca
ggactcccagggagtccagggaaaccaggtcatggtttcccaggtcagcctggacctagg
ggacccgagggtcaaccaggcccagaggggccagaggggatcccaggagctaaaggtgat
ccaggaatccccggtgccccaggtatccctggagtctccgttggtggctcctatagtcct
gccgcctcaggcccaccaggccaacctggaccacctggaccacccggtccatccggtcca
cctggaagagacggaagtggacacatggatgtaggcacgtaccttgcagagtaccttcag
agtagctccttcagttctggtgccccagggccacctggaccaccaggtcctcctggaaga
gatggaactggatctggatcacctgatgtgggccagtacattgcacagtacattcagagt
gatggcgtcagacagtacctggcaggacctcctgggcctcctgggccacctggtgcttca
tggccttcgagtcctgcaggggacggactggtggatgacgtggcaaacagagttatcgcc
tacatgcagagccaaggtagaggatatgacagggatcctggccctcctggtcctccaggt
cctcctggctccatctctgtcaatgatgtcatcgccgtattacaaagagaggaagtgagg
agatatggtgctggtactcctggtccaccgggaccccctggagctccgggccatggcagc
tacagaatcaacacccaggaggtggctgaacgtgtactcaccctactgaatgagaggcag
gtgttaggtgtccccggaccccctggaccccctgggctacctggagactcattccaagtt
gtcggtcctcaagggcatccaggagccccgggtgtccctggtatccctggtagagaaggt
ccacctggaccaccaggatctagcaactacatcaattcagacatacgtgactacttgcag
agtgtggactttagaggtttaccaggcccccctggtccccctggaccagagggcccccct
cgtggtctccatggactggtttcctttgctgagtatgcaaacagagaacctcccacagca
gaaaaacaacaatacatcaacgatgatagtatgagaggaactatgttcggccttcctggt
gcaccaggccctcctggacccccaggacacaggggagagccaggggaacctggcacaaag
gacagcatcctggatactggagactactccagcgtcgctgtcaaagtaactgattacatc
aaatcccacggtctgctccgtgatgttgggggaaactctgaacgttttgttcaaggacct
ccaggacctcctggacttcctggaatgcctggacaaagccaattggttagctcccgtgaa
aatatcatggatgttgtggaatacatcaaatctcagggtctgctacgtgacttaaaacaa
aaccacaatgatcatggcatccaaggtccgcgaggagcaccgggacctccaggtccaccg
ggactcagccagttgtttgggtcccaagaaaatcttattgatttagtggaatacatcaaa
aaaaatggatccattgtaggaccgcctgggagaccaggacagaaaggggacattgggttc
ccggggccaaaaggagacagaggagaatacgcaccggctgttaaaagaaggaagaggaac
gttagaatgtaa
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