Eleginops maclovinus (Patagonian blennie): 134865484
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Entry
134865484 CDS
T09869
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03030
DNA replication
emac03410
Base excision repair
emac03420
Nucleotide excision repair
emac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
134865484 (lig1)
03410 Base excision repair
134865484 (lig1)
03420 Nucleotide excision repair
134865484 (lig1)
03430 Mismatch repair
134865484 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
emac03032
]
134865484 (lig1)
03400 DNA repair and recombination proteins [BR:
emac03400
]
134865484 (lig1)
Enzymes [BR:
emac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
134865484 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
134865484 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
134865484 (lig1)
DNA replication proteins [BR:
emac03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
134865484 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
134865484 (lig1)
DNA repair and recombination proteins [BR:
emac03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
134865484 (lig1)
NER (nucleotide excision repair)
Other NER factors
134865484 (lig1)
MMR (mismatch excision repair)
Other MMR factors
134865484 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
134865484
NCBI-ProteinID:
XP_063741094
LinkDB
All DBs
Position
6:complement(21904210..21955786)
Genome browser
AA seq
1000 aa
AA seq
DB search
MQRSIASFFQPKGKDVQKKTSDEPVKKPVKSPLKVQNGVQEADSPVKKVVKRSRQILDSD
DDEAPVVKEQVATNGDKEATAKPEKKDDVFKAVPTPMSPPPAPATSMTPATPATSASPRT
PSTPNSISPSGVVKRKTARKMFPKRKLDESSESQKDESEAKEEPGQKNKRPRVESPGNPD
EPMEEEAKEERVEKVVTEVTSPDEEEEVEKKKEPKKEEVEKAKEEEKSSDEKEKKAEGAE
NETEAKEKKDDEKAATKKKKEKVDEKETREAGKSPESQTPRKQKEAKEQKDKEPPKKSPI
SSFFAPRKAAVKTEKSEKSEEERKTSPERKVSAEESKDVKGESTSTQTDYNPARPNYHPV
DHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLCCVYLCLN
QLGPAYLGLELGVGETVLMKAVAQATGRQLDKIKADAQEKGDLGLVAESSRSNQRIMFQP
ASLTAGGVFRKLKEIGSMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAE
QSVLSALSQAVCLTPPGQGFPPTVIDAGRGMSTESRRAWIEAKSLILKQTYCEMPNYDVL
IPVLLKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQI
HILENGEVRVFSRNQEDNTTKYPDIIARIPKMKKDSVVSCVLDSEAVAWDREKKQIQPFQ
VLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLRENFTEVEGEFVFA
TYIDSDNTDTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVGDT
MDLCVIGAYLGKGKRAGAYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHYNFLKEHI
LPKPRPYYRVDQSAEPEVWLDAMQVWEVKCADLSLSPVYKAAMGMVDPVKGISLRFPRFL
RIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKAELEDYY
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atgcagaggagcatcgcatccttcttccagcccaagggcaaagatgtccagaagaaaacc
tccgatgaaccggtgaaaaaacccgtcaaaagtcctctgaaggtgcagaacggcgtccag
gaagcggattcacccgtcaagaaagttgtgaaacgcagccgtcagatcctggacagcgac
gatgacgaggcgccggttgtaaaggagcaagttgctaccaacggagacaaagaagctacg
gctaaaccagagaagaaggatgacgtcttcaaggccgttcccacccccatgtctcctcca
cctgccccggccacgtctatgaccccagccaccccggccacttcggcttcacccaggacc
cccagcaccccgaactccatctccccctctggggtcgttaaacgtaaaaccgcgaggaag
atgttccccaagaggaagctcgatgagagcagcgagagccagaaagacgagtccgaggcc
aaggaggagccgggtcagaaaaacaaacgaccccgtgtggagagcccagggaaccctgac
gaacccatggaggaggaagcaaaggaagaacgagttgaaaaggtagtgaccgaggtgacg
agcccagatgaggaggaggaggtggagaagaagaaggagccgaagaaagaggaagtagag
aaggccaaggaggaggaaaagagctctgatgagaaagaaaagaaagctgagggggcggaa
aatgaaactgaagcgaaggagaagaaggatgatgagaaagctgccacgaagaagaagaag
gagaaggtggatgaaaaggaaacaagagaggcaggaaagagcccagaaagtcaaacaccg
agaaagcagaaagaagcaaaagagcagaaagataaggagccgcccaaaaagtcccccatc
agcagtttctttgctccaagaaaagccgcagtgaagacggagaaatcggagaagagcgaa
gaagagagaaagacgagtccagagaggaaggtgtcggcggaggagagcaaagacgtgaag
ggggagtcgacctcaacccaaacggactacaatcccgccagacccaactaccaccctgtg
gatcacgcctgctggaagcaaggccagaaagtgccgtacttggcggtggctcgcaccttt
gagaagattgaagaggactctggcaggctgagaaacatcgagacgctgtcgaacctgctc
cgctccgtgctgctgctctctccagacgacctgttgtgctgtgtgtacctgtgtctgaac
cagctgggtcccgcctacctgggcttggagctcggtgtcggagagacggtgctaatgaaa
gctgttgctcaagccactgggcgacaattggacaaaatcaaggcagatgcgcaggagaag
ggagatttgggtctagtggccgagagttcccgtagcaaccagcgcataatgttccagccg
gccagtctgacggcagggggcgtgttcaggaaattgaaggaaatcggcagcatgagtggg
aactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttc
tccgaggcccgctacatcgtcaggtccctggccgggaagctgaggatcggcctggctgag
cagagcgtcctatcagcactgagccaggctgtgtgcctcaccccccctggacaaggtttc
cctcccactgtgatcgacgcggggagggggatgagcaccgagagccggcgggcctggatc
gaagcgaagagtctaattctcaaacagacttactgcgagatgcccaattacgacgtcctg
atccccgtcctgctcaaagaaggcatcgatgagctgcccaatcactgcaagctcactcca
ggtgtaccgctgagacctatgttggcccaccccaccaagggtgttggcgaggtgatgaag
aggtttgacgaggcggcgtttacctgcgagtacaaatacgacggagagcgcgctcagatt
cacattctggagaacggcgaggtgagagtgttcagccgcaaccaggaagacaacaccacc
aaatacccagatatcatcgctcgcatccccaagatgaagaaggattctgtggtgtcctgc
gtcctggactcggaggcggtggcctgggatcgggagaagaaacagatccagcccttccag
gtcctcaccacccgcaagagaaaggacgtggacgcttcggagatcaaagtgcaagtgtgc
gtgtacgcctttgacctcctctatctcaatggagagtccctggtgcggcagccgctgtgt
cggcgtcgggctctgctgagggaaaacttcacggaggtggagggagagtttgtgttcgcc
acatacatcgactccgacaacaccgacaccatcgcagagttcctggagcagtctgtccga
gactcctgcgagggtctaatggtgaagacgttggagaaggatgccacctacgaaatcgca
aagcgctctcacaactggctcaagctgaagaaggactacctggacggggtgggggacacg
atggatctgtgtgtgatcggcgcctacctgggaaaaggcaagagggcgggggcctacggg
ggcttcctgctggcctgctacgatgaggagaacgaggagttccagtccgtgtgcaagatc
gggacaggcttcaaggatgaggatctggagcagcattacaatttcttaaaggagcacatt
ctgcctaagccccgcccctactaccgtgtggaccaatcagcagagcccgaggtgtggctg
gacgccatgcaggtctgggaggtgaagtgcgccgacctgtcgctgtcgcccgtctacaaa
gctgccatgggaatggtggatccagtgaagggcatttctctgaggttcccccgcttcctt
cggatccgagatgacaaaaagccagaggacgccacgactggagctcagattgctgatttg
tacaagaagcagcagcagattcagaaccagggggagaaagccgagctggaggactactac
tga
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