Eleginops maclovinus (Patagonian blennie): 134865843
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Entry
134865843 CDS
T09869
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134865843 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emac03019
]
134865843 (smg7)
Messenger RNA biogenesis [BR:
emac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
134865843 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
134865843 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
134865843
NCBI-ProteinID:
XP_063741681
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All DBs
Position
6:complement(25486204..25498357)
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AA seq
1161 aa
AA seq
DB search
MNLCAQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPSRV
KSSQLGIISNKQSGSSAIVTPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK
TKWSVSDFIRAFIKFHGHVYLSKSLDKLDALREKLEEQFQRLILQKAFSSQQLVHITVIN
LFELHHLRELPADGGEPSCSSEQPVSWFQLLGLFMSFLGVMCSRALLNKSLGEEIMGECP
LPAIKVSLDWLRLRPSVFHEAAVDQRTHIWPWLVSILNSFQPKEDDVTCPSVTPLPEEFE
LQGFLALRPALRSLDFTKGHQGILVDRDGLPLHTRHQRLISLGKWVADTQPGLIQCSVSE
DGLLLFITDIPEQAIEEPQEKEAPVLQESSNAELQPNDGGGGSSGLKSVLSAGKTQSSWP
DGGERPVVTFKENIKPREPSRSQQLKDSSKERRDFSKGPGAAGKTEPKRDGKRKSELKKA
PHEKSNDAGKQVKAQAELRKTPVSEAKKTPVTQTQTPSQFIPIHHPGAFPPLPSRPGFPP
SAYVIPPPVAFPGLQVNPGFTFSTGVSVPPFLQPGVHSQAGSQGGKPSHIPYSQQRPSGP
PQGPGSSGPPQSVQQLQVQAMNQQQQQSPTKPMGKSPPHHPGMQQYMQEQPAQMWTQAQA
ALQKLSPMQMSLKQQQQQPPPQQQGFYMAAPDPLKLYEHQLQAPAPPQLSMDKKMKFPNM
KMQDFYWEPSYRMGEGLAVMADRMKRAPPGGMCSEQEGQQGPRGPPFEDNKSSPLLPPDL
LKTLADFEEEEELVFSKPPDFFQALAGPLSTVPGPNIFLPNQTRMESGPEVVTQSSSLLP
ISGFPMQEYNQNSIFSQAYGKNLPPSSKPDAPMMHQEPSLYSLFEGTPWSPSLPASSDHS
TPASQSPHSSNPSSLPSSPPTHNHGAMPFSNFGPIGTPDSRDRRVVDRWKADKTGPGSGF
GLDYLPTGASSGSDSSWHQAPPPGSSWTNQESPMEESSTVLLDSLKSIWSSSMMQPGPSA
LEQLLLQQKQKQQRGAMNPPH
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgcgcccagtatctacgacaggcagaggccctgaaggcggacatgacagat
tcgaagctgggcgcggccgaggtgtggacgtcgcggcaggcgctgcaggatctgtaccag
aagatgctggtgaccgacctggagtacgctctggacaagaaggtggagcaggacctgtgg
aatcatgcctttaagaaccagatcaccacactgcagagccaggccaagaaccgggccaac
ccaaaccgcagcgaggtgcaggccaacctgtcgctgttcctggaggcagccagcggcttc
tacactcagttgctgcaggagctgtgcacggtgtttaacgtggacctgccgtcccgcgtc
aagtcgtctcagctcggcatcatcagcaacaagcagagcggcagcagcgccatcgtcacc
ccgcagcccagctcctgctcctacatctgccagcactgcctcgtgcacctcggagacatc
gcgcggtaccgtaaccagacgagtcaggcggagtcgtactacagacatgccgctcagctg
gttccgtctaatggtcagccgtacaaccagctggctatcctggcctcgtccaaaggagac
cacctgaccaccatcttctactactgccgcagcatcgccgtcaagttccccttcccagca
gcctccaccaacctgcagaaggcgctgtccaaggccctggagagccgagatgaggtgaaa
accaagtggagcgtctcagatttcatcagggccttcatcaagttccacggtcacgtctac
ctgagcaagagtctggacaaactggacgctctgagggagaaactggaggagcagtttcag
aggctgatcctgcagaaggccttcagctcgcagcagctggtccacatcacggtcatcaac
ctgttcgagctgcaccacctcagagagctgccggcggacggtggcgagccgagctgcagc
agcgagcagccggtcagctggttccagctgctcggcctcttcatgtccttcctgggcgtc
atgtgcagccgagctctgctcaacaagagtctgggggaggagatcatgggggagtgtcct
ctgcccgccatcaaggtgtctctggactggctcaggctgaggcccagcgtcttccacgag
gctgctgtcgaccagaggacgcatatctggccctggctcgtctccatcctcaacagtttc
cagcccaaagaggacgatgtgacctgcccctcagtgacgcccctgccggaggagtttgag
ctgcagggattcctggcgctgcgtcctgctctcaggtccctggacttcactaaaggacat
cagggcatcctggtggaccgggacggactgccgctgcacacccgccaccagaggctcatc
agcctggggaagtgggtggccgacacccagccggggctgatccagtgcagcgtgagcgag
gacggcctcctcctcttcatcaccgacatccccgagcaggccatcgaggagccgcaggag
aaagaggcaccggtgctgcaggagtcgtccaacgccgagctgcagcccaacgacggcggc
ggcgggagctcgggcctgaagtccgtgctgtcggcggggaagacgcagagctcgtggccc
gatggcggcgagcgacccgtcgtcaccttcaaggaaaacatcaaaccccgcgagccgagc
cgcagccagcagctgaaggacagcagcaaggagcgccgggacttcagcaagggccccggg
gctgctgggaaaacagagcccaagagggacggcaaaaggaagagcgagctgaagaaggcc
ccgcacgagaagagcaacgacgccgggaaacaggtgaaggcgcaggcggagctgaggaag
actccggtgtccgaggccaagaagacacctgtcactcaaactcaaaccccctcccagttc
atccccatccatcatccaggagctttcccccccctgcccagcagaccaggtttccccccg
tctgcctatgtgatcccccccccggtcgccttcccggggctgcaggtgaacccaggcttc
accttctccaccggggtgtctgtcccccccttcctgcagccgggggtccacagccaggcc
ggcagccagggcgggaagccctcacacattccctatagccagcagaggccctcgggcccc
ccccaggggccgggctcctcggggcccccccagtcggtgcagcagcttcaggtgcaggcc
atgaaccagcagcagcagcagtcccccaccaaaccgatggggaagagccccccccaccac
ccagggatgcagcagtacatgcaggagcagccggctcagatgtggactcaggctcaggca
gccctgcagaagctctcccccatgcagatgtctttgaagcagcagcagcagcagcccccc
ccccagcagcagggcttctacatggcggccccggaccccctgaagctgtatgagcaccag
ctgcaggcccccgcccccccgcagctctccatggacaagaagatgaagttccccaacatg
aagatgcaggacttctactgggagccgtcctaccgcatgggggaggggctggcggtgatg
gccgaccgcatgaagagggccccgccaggggggatgtgctccgagcaggagggccaacaa
ggaccacgtggacccccgtttgaggacaacaagagctctcctcttctcccccctgacctg
ttaaaaactctagcagactttgaggaggaggaggagctggtgttctcaaagcctcctgat
ttcttccaggcgctggccggtcctcttagcactgtgcctggacccaacatatttctgccc
aatcagacccggatggagagcggccctgaagtcgtcacccaatcatcttctctcctgccc
atctccggcttccccatgcaggagtacaaccagaacagcatcttcagtcaggcctacggg
aagaacctgccgcccagctccaagcccgacgctcccatgatgcaccaggagccgtcactc
tactccctgttcgagggcacaccctggtccccctccctccctgccagctcagatcactcc
accccagccagccagtccccccactcctccaaccccagcagcctgccgtcttcccccccc
acacacaaccacggagccatgccgttctctaacttcgggcccatcggcaccccggacagc
cgggaccgcagggtggtggaccgctggaaggccgacaagaccgggccgggcagcgggttc
ggactggactacctgccgacgggggcctcttcagggtcggacagcagctggcaccaggcc
ccgccccccggcagctcctggaccaatcaggagtctccgatggaagagtcgtccaccgtg
ctgctcgacagcctcaagtccatctggtccagctccatgatgcagccgggcccgtctgcg
ctggagcagctgctccttcagcagaagcagaagcagcagcgcggcgccatgaaccccccg
cactga
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