Eleginops maclovinus (Patagonian blennie): 134866110
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Entry
134866110 CDS
T09869
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03008
Ribosome biogenesis in eukaryotes
emac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
134866110 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
134866110 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emac03019
]
134866110 (xrn1)
03009 Ribosome biogenesis [BR:
emac03009
]
134866110 (xrn1)
03016 Transfer RNA biogenesis [BR:
emac03016
]
134866110 (xrn1)
03036 Chromosome and associated proteins [BR:
emac03036
]
134866110 (xrn1)
Messenger RNA biogenesis [BR:
emac03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
134866110 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
134866110 (xrn1)
Ribosome biogenesis [BR:
emac03009
]
Eukaryotic type
Pre-60S particles
RNases
134866110 (xrn1)
Transfer RNA biogenesis [BR:
emac03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
134866110 (xrn1)
Chromosome and associated proteins [BR:
emac03036
]
Eukaryotic type
Gene silencing
piRNA pathway
134866110 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
HTH_SB
HTH_Tnp_Tc3_2
SH3_12
DDE_3
HTH_23
Dicer_dimer
HTH_32
HTH_38
DUF6115
KinB_sensor
HTH_28
Ppx_C
Motif
Other DBs
NCBI-GeneID:
134866110
NCBI-ProteinID:
XP_063742153
LinkDB
All DBs
Position
6:complement(9472913..9505327)
Genome browser
AA seq
1823 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHSKLSTDKLWQNVNVYLSGHETPGEGEHK
IMEFIRSENRKPYHDPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKNQKRIT
APEETTFHLLHLSLMREYIDYEFSGLRHDLGSKYDLERIIDDWILMGFLVGNDFIPHLPN
LHISHDALPLLYRTYICALPTIGGYLNENGHLNLRNFEKYLEKLAEFDREHFNEVFVDLK
WFESKVGNKYLNEAAGLAAEEEAANKESNKNEDSVSSGRLIGEGKGGDDEEEEDDMFETE
FRQYKRTYYMTKMGVDVVSDEFLARQAKCYVEGIQWILHYYYHGVQSWSWYYPYHYAPFL
SDIRNIADLKLTFDIGRPFMPFQQLLAVLPAASMELLPQSYRHLMSSENSPIIEYYPVDF
KTDLNGKQQEWEAVVLIPFIDERLLLAAMEPYNDKMTKAEKDRNCHTDCAVYSHDSEVDF
PLTSSLPQLFPDIVHCKVRKVNIPMDAWHVPLDHVSRRLDRSALYFCGFPTLQHIKHKFS
KKKSGVVVFQQSSRGENMILDILHSDQRETLCDDVAAKVLGKSVFVNWPHLEEARIIAVS
DGDVKFCLEEPPGVQQLYDRSSTPPPTKVNCLSDKEQKDWVKDVQGITEHFMKRKGIIVN
ETSVVLYGQTLAGRKYVPKANGVVELEKQWAKQVLPFAFQTVVKDIEAFCSSQSCFRSLD
ELFPPATNVFMVGNPYYGAMGEVQDSSDVIKEGRVRVVFNVPHEPQLEPLIQNQHKYCVK
YSPGYILASRLGVTSYLVSRFSGSIFIGRGCKRNPCGEQKANVGLNLKFNKKNEEVPGYT
KRTEKEWLYSAAVEELLAEYLDRFPEVFNLVSRNSHDDVFYEDDIWPGADVNGPEKVSEI
TSWLKSHPVSSISRSSCDLQVLDSAIVERIEEAVEKAKVKKSTKKVRVTVKPHLLFRPLE
QHQGVVPDPDSEYRLFDRVINTREGFSVPLGLRGTIIGIQGAEREAEVLYEVLFDDEFAG
GLNIRCKSPRGYRIPPCALINLTHGVRVDQSSHKLTAIVKPQPATAANFSSQRQVSGLNH
SPRSPFTPTQHNSKHGMVKAASQGNRDSPSKGPVQKQQAKEYNNVWQSLQNSGPPLQPPA
HWHNAPVGGIRLLKKNEDVSSLSPPQNTANKSTTEFEDLIASLQISKGHQQAPLPPAPQQ
VPSSQSDGPLSPQSFAMKGTLMLKEMLKIDGAGTGSPSPQEAAGGQQPNRRRSNKKLAAN
MNSPHGDGPVIPPPNLSNAVLNSKVSELACICVGLGMAPPDFSYISNRQTVVCQVKLSNG
LMVHGPQCQSENDAKEKAAFFALQRLYKRHLSTTSNSHTPNSTMAKTKELSKETRDKIVD
LHQAGKTESAIGKQLGVKKSTVGAIIRKWKTYNTTANLPRSRAQRKISPRGVKMITRTVS
KNPRSTRGDLVNDLQRAGTKVTEATISNTLRRQGLKSCSSRRVPLLKPVHVQARLKFARG
HLNDPEEDWENVIWSDETKIELFGKNSTRRVWRTKNAELHPKNTIPTVKHGGGNIMLWGC
VSAKGPGRLIRVKERMNGAMYREILSENLLPSARALKMKRGWVFQHDNDPKHTARATKEW
LPKKHFKVLELPSQSPDLNPIENLWRELKVCVAQRQPQNITALEEICMEEWAKIPATVCE
NLVKTYRKRLTSVIANKGYITKY
NT seq
5472 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccgaaattttaccgatggatttcagagcgatatccctgcctcagtgaagtt
gtcaaggaacatcagattccagagtttgacaatctctatctggatatgaatggtattatc
caccagtgttcgcaccccaacgacgaggatgtccactttcgcatttcagaggagaagatt
ttcgccgacatcttccattacctggaggtgctcttcaggatcatcaagccccgcaaggtg
ttcttcatggctgtggacggcgtggcaccaagggcaaagatgaaccagcagagaggacgg
agattcaggtctgccaaagaagctgaggacaagataaaaaaagctctggaaaaaggagag
gtgcttcccacagaggctcgcttcgactccaactgtatcactcctggcactgacttcatg
gcgagactccaggagcagctgaagtattttgttcacagcaagttgtccacggacaagctg
tggcagaacgtcaatgtctacctgtcgggtcacgagactccaggggagggggagcacaag
atcatggagtttattcgctctgagaacagaaagccctatcacgaccccaacacccgacac
tgcctgtacggcctcgatgccgacctgatcatgttgggtctgaccagccacgagccaaat
ttctccctgctcagagaagaggtccgctttggagggaaaaaaaaccagaaaaggataacg
gctccagaggagacaacctttcatttgcttcacttgtctctgatgagggagtacatcgat
tatgagttctctgggctcaggcatgacctcggttctaagtatgacctggaacgaataata
gacgactggattctaatgggcttcctagtggggaacgatttcatccctcacctcccaaat
cttcacatcagtcatgacgctctgccgctgctgtacaggacttacatctgtgctctgccc
accatagggggttatctcaatgagaacggccacctgaacctcagaaactttgagaaatac
ttggagaagcttgctgagttcgatcgagaacatttcaatgaggtcttcgtggacttgaag
tggttcgagagtaaagttggtaacaagtatctgaacgaggcggccgggttggcggcagaa
gaggaagctgccaacaaagagagcaacaagaatgaggattctgtctcatcaggacggctg
atcggagaaggaaaaggaggcgatgatgaggaagaggaggatgacatgtttgagaccgag
ttcagacagtacaagcgcacgtactatatgaccaagatgggcgtggatgttgtgtctgat
gagttcctggccagacaggcgaagtgttatgtggaaggtatccagtggattcttcactac
tactaccacggggttcagtcctggagctggtactacccctaccactacgctcccttcctg
tccgacatcaggaacatcgccgatttgaagttgacctttgacatcgggagacccttcatg
cccttccagcagctgctggccgtcctgcctgctgccagcatggagctgctgcctcagagc
tacaggcacctgatgtccagtgaaaactcgcccatcattgagtactaccctgttgacttc
aaaacggacctcaatggcaagcagcaggagtgggaggctgtggttctcatccccttcata
gatgagaggttgttgctcgcagccatggagccctataatgacaagatgacgaaagcggag
aaggacaggaactgtcacacagactgtgcggtttactcgcacgactctgaagtagacttc
cccctgacctccagcctgccgcagctcttccctgacatcgtccactgcaaagtcaggaaa
gtaaacatccctatggatgcttggcacgtcccgctggaccatgtcagcagacgcctcgac
cgctcggctctgtacttctgcggcttccccaccctgcagcacatcaaacacaagttttcc
aagaagaagagtggagtggtcgtgttccagcagagcagcagaggggagaacatgatactg
gatatccttcacagtgatcaaagagagacgctatgtgatgatgttgctgcaaaggttctt
gggaagtctgtgtttgtcaactggccgcatctagaggaagcacgcatcattgccgtgtca
gatggagacgtcaagttttgtttagaggaaccgcctggtgtccaacaactgtacgacagg
tcttccacccctcctcccaccaaagtcaactgcctgtctgacaaggagcagaaggactgg
gtgaaggacgtgcaggggatcactgaacatttcatgaagaggaaaggcatcatagtgaat
gagacgtctgtggttctgtacggccagacgctggcaggaaggaaatacgtccccaaagcc
aacggggtggtggagcttgagaaacagtgggccaagcaggtcctccctttcgccttccag
accgtggtgaaggacattgaggccttttgctcatcccagagctgcttcaggagcctagac
gagcttttccctccagcaacaaatgtcttcatggtcggaaacccttactacggagccatg
ggcgaggtgcaggactctagtgatgtcatcaaagaaggccgtgtacgagtggtcttcaac
gtgccgcacgagccacagctggagcccttaattcagaatcagcacaagtactgtgtgaag
tacagtcctgggtacatcctggcttctcggctcggcgtcaccagctaccttgtctcccgc
ttctcaggaagcatcttcattggccgaggctgtaagaggaatccctgtggcgagcagaaa
gcaaacgtcggcctgaacctgaagtttaacaagaagaacgaggaggttcccggttacacc
aagagaacggagaaggagtggctctactctgctgctgtggaggaactgctggccgaatac
ctggacagattccctgaggtgttcaacttggtgtccaggaacagtcatgatgacgttttc
tatgaagacgacatctggcccggagcggacgtgaatgggccggagaaggtatctgaaatc
acctcatggctgaaaagtcacccagtgagctccatcagcaggtcgtcatgtgacctacag
gtgctggactcggccattgtggaaaggatcgaggaagcggtggagaaagccaaggtgaag
aagagcaccaagaaagtcagagtgaccgtcaagcctcatctcctcttcaggcccttagag
caacatcagggtgtggtgcccgacccggattcagagtatcgcctgtttgaccgagtcatc
aacaccagggagggcttctccgtccccctgggactcagagggaccatcatcggcattcaa
ggagcggagcgtgaggccgaggttctctacgaggtgctttttgacgatgagtttgcaggg
ggtctcaacatcaggtgtaagtccccccgtggttaccgcatccctccctgcgccctcatc
aaccttacccatggagtgagagtggatcaaagctcccacaagctcaccgccatcgtcaaa
cctcagcccgccacagccgcaaacttcagctcccaacgccaggtgtccggcctcaaccac
tccccgcggtcccccttcactcccacacagcataacagtaaacacggcatggtgaaagca
gcctcccagggcaacagggactctccctctaaaggtcccgtgcagaaacagcaggccaag
gagtacaacaatgtgtggcagtctctgcagaactccggcccccctctacaacctcctgct
cactggcacaatgccccagttggtggcatcagactgttgaagaaaaatgaagacgtcagc
tccctttccccccctcagaacacagccaataagtctacaactgagtttgaggacctgata
gccagccttcagatctcaaagggccaccagcaagcccctctgcctcctgctccccaacaa
gttccctcaagccaatcagatggcccgctgtctccgcagtccttcgccatgaaggggacc
ctgatgctgaaggagatgctaaagatcgacggcgctggaacaggaagtccctccccacag
gaggcagccggtggccagcagccgaacaggagacggtcgaacaagaaactggcagccaat
atgaactccccccacggtgacggccctgttataccccctccaaatctctccaacgccgta
ctgaacagtaaggtgtcggagctggcatgcatctgtgtggggttaggaatggcaccgccc
gatttcagctacataagcaacagacagactgtcgtgtgtcaggtgaagctgtccaatggg
ctcatggttcacggtccccagtgccaatcagaaaatgatgccaaggaaaaagctgccttc
tttgccctccagagactgtataaaagacacctgtccacaacctcaaacagtcatactcca
aactccactatggccaagaccaaagagctgtcaaaggagaccagagacaaaattgtagac
ctgcaccaggctgggaaaactgaatctgcaataggtaagcagcttggtgtgaagaaatca
actgtgggagcaattattagaaaatggaagacatacaacaccactgctaatctccctcga
tctcgggctcaacgcaagatctcaccccgtggggtcaaaatgatcacaagaacggtgagc
aaaaatcccagaagcacacggggggacctagtgaatgacctgcagagagctgggaccaaa
gtaacagaggctaccatcagtaacacactacgccgccagggacttaaatcctgcagttcc
agacgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagaggg
catttgaatgatccagaagaggattgggagaatgtcatatggtcagatgaaaccaaaata
gaactttttggtaaaaactcaactcgtcgtgtttggaggacaaagaatgcagagttgcat
ccaaagaacaccatacctactgtgaagcatgggggtggaaacatcatgctttggggctgt
gtttctgcaaagggaccaggacgactgatccgtgtaaaggaaagaatgaatggggccatg
tatcgtgagattttgagtgaaaacctccttccatcagcaagggcactgaagatgaagcgt
ggctgggtctttcagcatgacaatgatcccaaacacaccgccagggcaacgaaggagtgg
cttcctaagaagcatttcaaggtcctggagttgcctagccagtctccagatctcaacccc
atagaaaatctttggagggagttgaaagtctgtgttgcccagcgacagccccaaaatatc
actgctttagaggagatctgcatggaggaatgggccaaaataccagcaacagtgtgtgaa
aaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagggtatata
acaaagtattga
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integrated database retrieval system
