Eleginops maclovinus (Patagonian blennie): 134866164
Help
Entry
134866164 CDS
T09869
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03013
Nucleocytoplasmic transport
emac03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134866164
03015 mRNA surveillance pathway
134866164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emac03019
]
134866164
Enzymes [BR:
emac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
134866164
5.6.2.5 RNA 5'-3' helicase
134866164
Messenger RNA biogenesis [BR:
emac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134866164
mRNA cycle factors
Common to processing body (P body) and stress granule
134866164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
NAT10_TcmA_helicase
DEAD
SRP54
UvrD-helicase
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
134866164
NCBI-ProteinID:
XP_063742230
LinkDB
All DBs
Position
6:11054835..11072180
Genome browser
AA seq
1112 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEGELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQQDNQVNG
PDGMLQNGDDPVLKAGQLLAELNFEEDEEDAYYTKDLPIHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTIPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPNQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSAYDRSNGRSSNMYFQTHDQIGMIGTGPNPMNSLNIP
IPFNLVMPPIPPPGYMGQVNGPSAGRGGGMKGKAGGGGGGGNRGGRQRNRGNMGNHNGGN
GGADRHGGHMSGSQASQDLGSQSFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGD
EFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctaacgttcctggacaccgaggag
ggcgagctgctgggagcagacacccagggctccgagtacgacttcaccgacttcaccctg
ccgagccagacccagacccaaggccaaacccagagtcagcaagacaaccaggttaatggc
ccagatggcatgctacagaatggagacgacccagtgttaaaagccggtcaactgctggca
gagttgaactttgaggaggatgaggaggacgcctactacaccaaggatcttccaatacat
gcctgcagctactgtggtattcatgatcccgcctgtgtggtctactgcaacaccagcaag
aagtggttctgtaatggccggggaaacacatccggcagccacattgtaaaccacctggtg
agggcaaagtccaaggaggtgaccctgcacaaagatggccctctgggggaaacggtgctg
gagtgctacaactgtggctgtcgcaatgtcttcctgttgggcttcatccctgccaaggcc
gactctgtggtggtgttactgtgcaggcagccatgtgccagtcagagcagcctgaaggac
atcaactgggacagctcacagtggcagcctctcattcaggaccgctgcttcctgtcctgg
ctggtgaaaatcccctcggagcaggagcagctcagggctcgtcagatcactgcccagcag
atcaacaagttggaggagctctggaaggaaaatcccactgcgaccttggaggatctggag
aagcctggtgtggacgaggagccccaacatgtgctgctccgctacgaggatgcctaccag
taccagaacatctttggtcctcttgtgaagctggaagctgattatgataagaaactcaaa
gagtctcagactcaagacaacataacagtgagatgggacttgggcctgaataaaaagagg
attgcttatttcactattcccaagacggattcggatatgcggctgatgcagggagatgaa
atctgcctgaggtacaaaggggatctggcccctccgtggaaaggcatcggacatgtcatc
aaagtccccgataactatggtgatgagattgccatagagctccggagcagtgccggcgct
ccagtggagatccctcacaactttcaggtggactttgtgtggaagtccacttcctttgat
aggatgcagagtgctctgaagacgtttgctgtggacgagacttcagtgtctggttacatc
taccacaagctgctgggacacgaggtagaggacgtggtcatcaagtgccagctgccaaaa
cgcttcactgctcaaggcctgcccgacctcaaccactcacaggtgtatgcggtgaagacg
gtgctgcagcgtcctctcagtctgatccagggtcctcctggcacagggaagacggtcacc
tctgccaccatcgtctaccacctggccagacagggcaacgggccagtgctggtgtgtgct
cccagtaacattgcggtcgaccagctgacagagaagatccaccagacgggcctgaaggtg
gtgaggctgtgtgccaagagcagggaggccatcgactcacctgtgtccttcctggctctg
cacaaccagacccgcaacatggacagtatgccagaacttcagaagctgcagcagctgaag
gacgagactggagagctgtcgtcctcagacgagaagcgctacagagctctgagacgcacc
gctgagagggaactgctcatgaatgccgatgtgatctgctgcacctgtgttggggcgggg
gatcctcgtctggccaaaatgcagttccgctcgatcctgatcgatgagagcacccaggcc
accgaaccagagtgcatggtgcccgtcgtcctgggggccaaacagttgattctggtgggg
gatcactgccagctgggcccggtggtgatgtgtaagaaggcggctaaagccggtctgtcc
cagtctctgtttgagcgtctggtggttttggggatccggccaatccgcctgcaggtccag
taccgtatgcacccggccctcagcgcctttccatccaacatcttctatgagggctctctg
cagaacggagtcactgccgcggaccgagtgaagaaaggctttgacttccagtggccacag
cccgacaagcccatgttcttctatgtcacccaaggccaggaggaaatagccagctctgga
acatcctatctcaacaggactgaggcagccaatgtggagaaaataaccaccaggttgctg
aaggctggagcaaaacccaatcagatcggcatcatcacgccctacgagggacagaggtcc
tacctggttcagtacatgcagttcagcggctccctccataccaagctctaccaggaagtg
gagatagccagtgtggatgcctttcaaggcagagagaaggacttcatcatcctctcctgt
gtgagggccaatgagcaccagggcatcggcttcctcaatgacccccgacgtctcaatgtg
gcactcactagggccaggtatggtgtgattattgtgggaaaccccaaggccctgtccaag
cagcctctgtggaaccacctgttgaattactacaaggagcagaaggtcctggtcgaaggg
cccctgaacaacctgagggagagcctcatgcaattcagcaagccccgcaagcttgtcaac
accatcaaccctgggggacgattcatgagcacagccatgtatgatgccagggaggctctc
attcctggatctgcttatgaccgcagcaacggtcgttcatccaacatgtatttccagacc
cacgaccaaattggtatgattggcaccggccccaatcccatgaattccctgaacatccct
atccccttcaaccttgtgatgccccccatacctccacctgggtacatggggcaggtcaat
ggaccctcagcaggtcgtggtggaggaatgaaaggcaaagcaggcggtggaggaggaggc
gggaatcgaggtggccgtcaaagaaaccgcggcaacatggggaaccacaacggagggaat
ggaggagcagaccggcatggaggacacatgagcggcagccaggccagccaggacctgggc
tcccagtcgttctcccaggggccgctgacgcagggctacatcaacatgagccagccgtct
cagatgagccagcctgggctctcgcagcctgaactctcacaggacagttaccttggagac
gagttcaaatcccagattgatgtggcgttgtcccaggactccacctaccagggggagcgg
gcctaccaacacggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
