Eleginops maclovinus (Patagonian blennie): 134867465
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Entry
134867465 CDS
T09869
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac04382
Cornified envelope formation
emac04510
Focal adhesion
emac04512
ECM-receptor interaction
emac04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134867465 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134867465 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134867465 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134867465 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
emac04147
]
134867465 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
emac00536
]
134867465 (col4a2)
Exosome [BR:
emac04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134867465 (col4a2)
Glycosaminoglycan binding proteins [BR:
emac00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134867465 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
134867465
NCBI-ProteinID:
XP_063744114
LinkDB
All DBs
Position
7:11995333..12056125
Genome browser
AA seq
1675 aa
AA seq
DB search
MSGTMQGQHERGLKNLRLLLLCLFIAILASGVHAGGKKHSGPCGGRDCSGGCKCFPEKGA
RGGPGPVGPQGPSGPPGRPGDAGIEGPKGQKGDHGRGGTMGPKGSVGMTGVPGFSGNDGI
PGHPGQAGPRGKPGADGCNGTQGESGSSGQPGYNGSPGFPGQPGWKGPKGDSLELSVFME
RFRGDPGMPGFKGIYGPLGNPGRQGNQGYPGPKGPQGPPGPRGPKGTMTKVLKGLSGDQG
DIGPPGLQGNSTHQQIQPPYGPTGLRGEKGLKGEIGDVADNKGETGVMGFPGPRGTSGAD
GRPGPRGDYGEQGPTGRDGLKGVRGEPGELVSLGSWPWSSGGGPPGPLGDQGPEGERGPV
GDQGIPGPPGRPASLSQQQVLDFFGPFGIKGESGEKGQPGDPGLPADRAGSPGTNGRPGA
KGPPGPKGSWSEFFKGPVGGRGRPGNAGFKGLKGDHGLCECSIVNSPPGPPGPAGERGDA
GMTGEYGREGDVGDPGPYGNFGVPGFPGRDGEPGQKGPKGEARVASNKGYPGDSGEPGPD
GVQGANGVSGRTGFAGISGTRGLPGEGLRGISGDKGYPGRPGQPGAPGLSGQDGAVLGGV
KGQRGLPGDDGLAGYDGVQGTPGAPGGCSPGDGGQVDITGPCDTFPGPAGLPGLPGDIGL
PGFKGPPGQKGSQGPLGEHGGKGETGDQGIGGRTGPPGFSGPRGDLGDPGRKGSVGAPGG
PGVPGRYGLQGEKGAHGVIFGASAGSPGDPGQPGLQGYKGQTGNPGEQGYPGLGGMPGMI
GQKGETGPLGLQGEEGRPGPAGRYGYPGDPGRAGLPGPQGSTGQPGLTGERGVDGEPGPP
GPIGLKGIPGPYGIDGGKGEHGPSGELGETGPDGRPGVPGMKGYKGSPGMSGFEGNRGNV
GVKGFSGQSGDPGTMGQVGPKGLLGQSGEKGDRGLRGPSGDKPHITAQLVVDMKGVKGDT
GYYGNQGFTGPRGVKGLPGVPGYEGTHGLPGEPSNNKGQIGDLGAEGLPGIKGMPGTTGN
RGITGFGGMPGNRGIKGGPGAYGASGEKGRNGFKGEKGPRIDLPGTTGFRGEHGLPGGQG
QKGVPGQPGDWGMPGFGGIVGKRGESGDPGIIGHPGSDGQKGTPGNQGQKGFTGAPGKDG
HPGFPGFPGNKGFSGVKGLYGLHGLKGQKGVPGTPGLDTTGQTGEPGSKGEKGTDGDPNS
QPGFPGTVGLKGFQGPLGDRGQPGSPGLRGPVGPEGTPDKPGLTGDPGSPGPKGYPGSPG
ANGFPGVNAPPGEKGVSGINGFPGIPGSKGLKGDRGSFGYRGPNGVSGKKGEKGEQGVMG
VPGIIGLKGGRGPSGPKGNTGHPGFRGFPGNQGPLPIPVRVPGERGPSGPLGIRGPEGVK
GESGPHGPHGDTGFMGPIGQKGMPGIGGTPGTPGYRGEFGQIGHPGLLGMEGQRGNPGIP
GITGMPGRSVSVGYLLVKHSQTAQVPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGS
CLPRFNTMPFLYCNPGDLCYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVCEAP
SVAIAIHSQDITIPQCPVGWRSMWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFF
ECNGAKGTCHYFANKQSFWLTSIDQSFHTEPASETLKAGQLLSRISRCQVCMKNL
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggaccatgcaaggacaacacgagagaggactgaaaaacctgaggctgctgctt
ctgtgtcttttcattgccatcctcgcctctggagtgcacgcgggcgggaagaagcacagt
ggcccctgtggaggaagagactgcagcggaggctgtaaatgtttcccagagaaaggtgcc
aggggtgggccagggcctgtaggtcctcagggcccctcagggcctccaggaagaccaggc
gatgcaggcattgaaggcccaaaggggcagaaaggtgaccacggccgtggtggcaccatg
ggtcccaaaggaagtgtgggaatgaccggtgtacctggtttctctggaaatgatggcatt
cctggccacccgggacaagctggaccccgggggaaaccaggggcagacggctgtaacggg
acacagggagaatctgggtcatctgggcaacctggctataatggctcacctggctttcct
ggacaaccaggctggaagggaccgaagggagactctctggagctgagtgtgttcatggag
cgcttcaggggagatccaggcatgccaggattcaaaggaatatatgggcctctaggaaac
ccaggtagacagggtaaccaaggctatccaggaccaaagggtccccaagggcctccaggt
ccccgtggaccaaagggcacaatgaccaaagtgcttaaaggactcagtggagaccaaggg
gacattggaccaccagggttgcaaggaaactcaactcatcagcaaattcagcccccctat
ggacccacgggacttcgcggcgagaaaggtctcaaaggagaaataggagatgtggctgac
aacaaaggagaaactggtgtgatgggattccctggcccgcggggtacatctggtgcagat
gggcgtcctggaccaaggggagattatggggaacaaggaccaacaggaagagatggtctt
aagggagtcagaggtgaaccaggagaactggtttcattaggatcttggccttggtcttca
ggaggtggtcctcccggtcctcttggtgatcagggtcccgagggagagaggggcccggtt
ggagaccaaggcatacccggacccccaggtcgccccgcctccctatcacagcaacaagtt
ttggacttctttgggccatttggtataaagggggagtcaggagagaagggccaaccagga
gatccaggactccctgcggacagggcaggatccccaggcaccaatgggcgtccaggtgcc
aaaggccctccagggcccaaaggatcatggtctgagttcttcaaggggcctgttggtggg
agaggaaggcccggcaatgcaggctttaaaggattgaaaggtgatcacgggctgtgtgaa
tgcagcattgtaaactctccaccggggccacctggacctgccggggagcgcggcgatgct
gggatgactggagagtatggtcgagagggggatgtaggagatccaggtccatatggaaac
ttcggagtccctggatttcctgggcgcgatggtgagccgggacaaaaaggtccaaaagga
gaagcaagggtggcctccaacaaaggatatcctggagactcaggggagccggggccagac
ggtgtgcaaggagcaaatggggtttcaggccgaactggttttgctggtatatctgggacc
cgaggtcttccaggagaaggtctaagaggaatatctggagacaaaggttacccaggtcgg
cctggtcaacccggcgcaccagggctaagtggacaagacggtgcagtccttgggggtgtc
aagggccaacgtggtttacctggggacgacggccttgcaggttatgatggagttcaagga
acacctggcgctccaggcggctgtagtccaggagatggaggacaggtggatataacaggt
ccttgtgacactttccccggacctgctgggcttcctggacttccaggcgacattggatta
ccaggtttcaaaggtcctccgggccagaagggatcacagggtcctcttggagaacatgga
gggaaaggcgaaacaggagatcaaggcataggtggccgtactggaccaccaggtttttcc
ggcccccgtggagacttgggtgatcccggccgcaaaggttcagtaggagcccctggaggg
cctggtgtgcccggtagatacggtctgcaaggtgaaaagggtgctcacggagtgattttt
ggagcgtcggcaggctcccccggtgacccagggcagccgggactgcaagggtataaaggc
cagaccggaaatccaggagaacaaggctatccaggattgggcggtatgcctggtatgatc
ggccaaaagggtgagactggccctctgggtttgcagggggaggaagggaggcctgggcca
gcaggcaggtacggctaccctggtgaccctgggcgagcaggtctacctgggccgcaaggc
agtacaggacaaccaggtttgactggagagaggggagttgatggagagccgggccctcca
ggtccaataggattaaaaggaatcccagggccatatgggattgatggtggtaagggagag
cacggcccatcaggtgaactgggagagactggtccagatggacgcccaggagttccagga
atgaagggatacaaaggatctcccggcatgtcaggctttgagggtaacaggggcaatgtt
ggggtgaagggcttcagtgggcaaagcggtgaccctggaacgatgggccaagtgggccca
aaaggattgctgggtcaaagcggagagaaaggtgatcgtggtttgagagggccctctggg
gacaagcctcacatcaccgcccagttggttgttgacatgaagggagtgaagggggacaca
ggttattatggaaatcaaggtttcaccgggccgagaggtgttaagggtttgcctggggtg
ccgggttatgagggaactcacggacttcctggagaacccagcaataacaagggtcaaatt
ggagacctaggtgcagaggggctgccgggaataaaaggaatgccgggcacaactgggaac
agaggaattactgggtttgggggaatgccaggcaacaggggcattaaaggaggtcctggt
gcctatggtgcatcaggggaaaaaggaaggaatggatttaaaggtgagaaaggcccacgc
atagacctaccaggaaccaccggatttagaggagagcatggtcttccaggaggacaaggc
cagaaaggagtacctggacaaccaggggattggggcatgcctggatttggtggaattgta
gggaaaagaggagagtcgggggatcctggaataatagggcacccaggctctgatgggcag
aagggaactcctggtaaccaaggtcaaaaaggctttactggagctcctggaaaggacgga
catccgggttttccaggcttcccaggaaacaaaggtttctctggcgtgaagggtctttat
ggattacatggacttaaaggacaaaagggtgtccccggcacaccaggtctggataccact
ggacaaactggggaaccaggaagcaaaggagagaagggaacagatggggaccccaacagc
cagccaggttttcccggcacagtgggtttgaaaggctttcagggccctctaggtgaccgg
ggtcaacctggatcgccaggactccgaggccccgttggaccggaggggacccctgacaaa
ccaggtctcacaggggaccctggctctccaggacctaaagggtacccaggttcccctgga
gcaaatgggtttcctggtgtaaatgctccccctggtgaaaaaggtgtatcaggaataaat
ggttttccgggaatccctggaagcaaaggactcaaaggagatagaggttcatttggatac
agggggccaaacggtgtttctgggaagaaaggggaaaaaggagagcaaggagtgatgggc
gttcctgggatcattggtttgaagggaggaagagggccatctggtccaaaaggaaacact
ggacatccaggttttcgtggattcccaggaaaccagggtccccttccaattccagtgaga
gtcccaggagagagaggcccctctggaccactgggtatccgaggaccagaaggggtcaaa
ggggaatcagggccacatgggccccatggcgatacaggtttcatgggacccattgggcaa
aagggcatgccggggattggtggtacaccaggaacacctggataccgtggagagttcgga
caaattggccaccccggtctgctaggcatggaaggtcaacgcggcaaccccggtatccct
gggataactggtatgccgggacgcagcgtcagcgtgggatacctgctggtgaaacacagt
cagacagcacaggtgcccatgtgtcctgtgggcatgtctaaactgtgggacggctacagt
ctgctgtacttcgagggccaggagaaggcccacaaccaggaccttggtctggctggctcc
tgcctcccacggttcaacaccatgcccttcctgtactgcaatcctggagacctttgttac
tatgccagcaggaatgataagtcctactggttgtcgacaaccgctcctcttcccatgatg
cctgtggaagagggagagattaaaccgtacatcagccgctgctcagtatgtgaagctcca
tcggttgccatcgcaatccacagccaggacatcaccatccctcagtgtcctgtgggctgg
cgcagcatgtggatcggctactccttccttatgcacacagcagcaggaaatgaaggcgga
ggtcagtctttgtcatcgccgggctcttgcctggaggacttccgcacaacaccgttcttt
gagtgtaacggggccaaaggcacatgccactactttgccaacaagcagagcttctggcta
acctccatcgatcagtctttccacactgagccggcatcagagacgctcaaagccggtcag
ctgctgtcacgcatcagccgctgccaggtctgcatgaagaacttgtga
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