Eleginops maclovinus (Patagonian blennie): 134867728
Help
Entry
134867728 CDS
T09869
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
emac04147
]
134867728 (col18a1a)
00535 Proteoglycans [BR:
emac00535
]
134867728 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
emac00536
]
134867728 (col18a1a)
Exosome [BR:
emac04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
134867728 (col18a1a)
Proteoglycans [BR:
emac00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
134867728 (col18a1a)
Glycosaminoglycan binding proteins [BR:
emac00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134867728 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
134867728
NCBI-ProteinID:
XP_063744581
LinkDB
All DBs
Position
7:20835939..20914070
Genome browser
AA seq
1456 aa
AA seq
DB search
MPKMRTSFGVLFLLTLWVVYSDAWLWGWTGTTTMPPTVDHEGSGSSEGSGEPSPENIAMV
RSEMIDEGHGIQKVAQTWDQTTEGLRLTPLVPTTQPRSGGASEKGTEGISSRIRKPEESG
VTLLQLIGDPPPSTITQVFGPDNSPGYEFGPDANSGQLARAYLPSPFYRDFSLIFNLKPT
SERGGTIFSITDAAQQIMYVGVKLSAVQGGNQYVILYYTEPDSQQSYEAARFRAPSMRDT
WTRFAIAVRDDKVMFYLNCDTDPQVLHLERSPDEMELELGAGVFVGQAGGADPEKFLGVI
EELRIVGDPRAAERHCEEDGDDSDMASGDGSGDDGKTSRPAGETHRWTTTPPSSRPIQQP
PLHKKDEEFTARETASDSRHSSVSVENRPGLPGSSGPAGAKGEKGSAGDTGMKGDRGPIG
PKGESSSGSRGGSRGEKGEPGEKGTKGSAGFGYIGKKGEPGPAGPVGPPGPPGPATEFSV
GGHGSVTSRAPGPQGPAGPPGATGPEGPPGTDGEPGDPGEDGKTGPEGPPGFPGTSGEPG
LKGDKGDRGDSQPGPRGPPGLPGPPGPGIRSTFADMEGSGFPDPESVRGQPGLPGPPGPP
GPPGPSTTGTSSSSGAFGPPGKDGLPGQPGLPGIPGTDGNPGAPGPKGEKGDSGELGLPG
AIGEKGSGGDPGIPGVPGQTGLAGLPGPLGPVGPPGPPGPPGSGYRVGFDDMEGSGGGFS
NGLPGARGPEGIQGSPGLPGLPGKAGLPGMPGQKGSEGAVGRDGRSGLDGFPGPQGPKGD
GGDKGERGDPGRDGSGVPGPPGPPGPPGQIIYQTDGNAGGVAGEVGRQRESGLPGQAGFP
GPIGPKGDRGDPGVPGYGVKGEKGEPGLVIGSDGNLMHLDGLSGEKGDRGLPGPVGPTGP
YGPAGIKGEIGMPGRPGRPGVNGYKGEKGESSGGSGYGYPGVPGQPGPPGPPGPPAPSTP
FDRFNRYDDTSRNYPATKGEKGEHGDRGLPGIPGTASNFDIYAFKNELKGERGDVGVKGE
KGEPSGGYYDPRFGGVQGQPGPPGQPGLEGPKGDSVVGPPGPQGPPGTPGIGYDGRPGSP
GPPGPPGPPALPGTYRPNNPVSIPGPPGPPGQPGSPALSSGVTVLRSYETMVATARRQSE
GSLIYILDKADLYLRVRDGLRQVMLGDYNPFFRDLENEVAEVQPPPVIVYTETQDQSQNN
GAGHYSHGGSAVLPIEPPPQPPVEPRYPPQYDPRFPDPRQTGHTDGRLVPHQTDNRYPVT
PRRPSLPIPQPAAPVDPSASGLHIIALNAPQTGNMRGIRGADFLCFQQARAVGLKGTFRA
FLSSKLQDLYTIVRRADRDNFSIVNLKDQVLLDSWESMFGDNARKMRENVPIYSFDGRDI
LRDSAWPEKMVWHGSNNKGHRQTDHYCETWRAGDHAVSGLASSLQSGHLLQQSSSSCSGS
YIVLCIENAFTTHSKK
NT seq
4371 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaatgaggacctcgtttggagttttgtttttgttgaccctctgggtggtctac
tctgatgcttggctctggggatggactggtactacaactatgcccccaacagtggaccat
gagggatctggcagttcagaaggtagtggagaaccttcaccagagaatattgcaatggtt
cgatcagagatgatcgatgagggacatgggatccaaaaggttgcccagacttgggatcag
accactgagggacttcgactgacccctctagtacctacaacacaaccaaggagtggtggt
gcatcagaaaagggaacagaagggatttcatcacgcattcgtaaacctgaagaaagtggt
gtcaccctgctacagctgattggggatcctcctcccagcaccattactcaggtcttcggc
cccgacaacagccctggctatgagttcggccctgatgccaactcaggccagctggcccgc
gcctacctgccgagccccttctaccgagacttctcccttatcttcaacctgaagcccacc
tccgaaaggggcggcaccatcttctccatcactgatgccgcacagcagatcatgtacgtg
ggtgtgaagctgtccgcggtgcagggcggcaaccagtacgtcatcctgtactacaccgaa
cccgactcccagcagtcgtacgaggcggccaggttccgtgcgccctccatgagggacacc
tggactcgctttgccatcgctgtgagggacgacaaggtgatgttctacctgaactgtgac
acggaccctcaggtgttgcacctcgagagatcccccgacgagatggagctggagttaggc
gctggggtctttgtggggcaagctggaggagctgatcctgagaagtttctgggggtgatc
gaggagctgaggattgtgggagatccccgcgctgctgagaggcactgtgaggaggatgga
gatgactcagacatggcttcaggtgatggaagcggcgatgatggtaagacttcaagacca
gctggagagacgcatagatggacgactactcctccatcctcccggcccatccagcagcct
ccactccacaagaaggacgaggagttcactgccagagaaacagcgagtgactcccggcac
agttcagtctctgtggagaacaggcccgggctgccagggtcctcagggccggccggggcg
aaaggagagaagggcagcgctggggacacgggaatgaaaggagacaggggtccgatcggg
ccgaagggagaatccagctccggatcacgggggggatcccgtggagagaagggagaaccc
ggggagaagggaacaaagggcagtgcaggctttggctacataggaaagaagggagagccc
ggccctgctggcccagtcggcccccctggccctccagggcccgcaacagagttttcagtc
ggcggtcacggttcagttacttccagagcccccggaccccaaggaccagctggaccacca
ggcgctacaggccctgagggaccaccaggaactgatggggagccaggtgatcctggtgag
gatggaaaaaccggccctgagggaccccctggcttcccaggaacctcgggtgagcctgga
cttaaaggagataagggcgaccgtggagatagtcaacccggccccagaggtccaccggga
cttcccggacccccaggtccaggaatcagatctacctttgcggacatggaaggctcaggg
ttccctgatcctgaatctgttcggggtcaacctggcctaccaggcccccctggccccccc
ggtcctcctggtccctctacaacaggcacatcatcgagttctggggctttcggaccccca
ggaaaggatggattgcccggtcaacctggcctgcctggtattcccgggacagatggcaac
ccaggagctcctggtcctaaaggagaaaagggtgattcaggcgagctgggtcttccagga
gcgattggagagaagggatctggaggagacccagggataccgggtgttccgggacagacc
ggattggctggtctgcccggacccctcgggccagtcggaccaccggggcctcctgggcct
cctggatctggctaccgtgtcggatttgacgacatggagggctctggtggaggtttcagc
aacgggcttcctggcgccagaggacctgaaggaatacagggttctcctggcctgcctgga
cttcctggtaaagcggggctgcctggtatgcccggtcagaagggcagtgaaggagccgtc
ggaagagacggacggtcaggcctggacggctttccaggacctcagggaccaaaaggtgac
ggtggtgacaaaggagagaggggtgaccctggtcgggatggatccggagtccctggcccc
cccggcccacctggacccccgggacaaatcatctaccagactgatggcaatgctggcggt
gtggctggtgaggttgggcggcagcgagaaagtggtttacccggtcaagctggattccct
ggtcctattgggccaaagggggacagaggagaccctggagttccaggctatggagtgaag
ggggagaaaggtgaaccaggcttagtgattggatctgatggaaatctgatgcatctggat
gggctgtcgggggagaagggagacagaggattacctggacctgttggacccactggcccg
tatggtccggctggaataaagggggaaattggaatgcctggaagacctggtcgtcctggt
gtgaacgggtacaaaggagagaaaggagaatcatcaggaggatcgggctatggctaccca
ggagttcctggccaacctggaccacccggaccacctggccccccagcaccaagcactccc
tttgatcgcttcaatcgctatgacgacacttcaaggaattacccagcaactaaaggagaa
aaaggagagcatggtgaccgaggactgccgggaatcccaggaacagcctctaactttgat
atttacgcattcaagaatgagctgaagggagagcgcggagacgtgggtgtgaagggagaa
aagggagagcctagtggaggatattacgacccacggtttggaggagtgcaaggacaacca
gggcctccgggccaaccgggcctagagggtccaaagggagactctgtggtgggacctcct
ggaccccaggggccaccaggaaccccagggattggttacgatggtcgtccaggttctcca
ggaccacctggacctccaggacctcccgcacttcctggaacatacaggcccaataacccc
gtcagtattcctggacctcctggtcctcctggccaaccaggaagtcctgctctctcctct
ggggttactgtgttgaggtcatatgaaacaatggtagctaccgccagacgccagtcagag
ggcagcctcatctacatcctggacaaagcagacctctatctgagagtacgcgatggactg
cgccaagtcatgctcggagattacaatcccttcttcagagatctggaaaacgaggtggca
gaggtccagcccccccctgtcatcgtgtacaccgagacccaggatcagtcccagaacaac
ggagcgggccattactcccatggcggttctgccgtactacccattgagcccccaccccaa
ccacctgtggagcccagatatcccccgcagtatgatcccagattcccagaccccagacag
acaggtcacacagatggacggttagtcccccaccagactgacaacagataccctgtaact
cccagaagacccagcctccccatcccgcagcctgccgcccctgttgacccgtcagcatca
ggactacatatcatcgccttgaacgcccctcaaactggcaacatgcgaggaattcgtgga
gccgacttcctgtgcttccagcaggcccgcgctgtcggcctgaagggaactttcagggct
ttcctgtcctctaagcttcaagacctgtacaccatcgtccgcagggcagaccgggacaac
ttctccatcgtcaacctcaaggaccaagtgttgttggacagttgggagtctatgtttggg
gacaacgcgcgcaaaatgagggagaatgtaccgatctactccttcgacggtagagacatc
ctcagggacagcgcatggccagagaaaatggtctggcatggatcaaacaacaaaggccac
cggcaaacagaccactactgtgaaacatggcgggcgggagaccacgctgtgtctggcctg
gcatcgtcactacagagcggacacctcctgcagcagagctccagcagctgctcaggctcc
tacatcgtcctctgcattgagaacgccttcacaacacactccaaaaaataa
DBGET
integrated database retrieval system
