Eleginops maclovinus (Patagonian blennie): 134867827
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Entry
134867827 CDS
T09869
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03015
mRNA surveillance pathway
emac04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134867827 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
134867827 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
emac03021
]
134867827 (sympk)
03019 Messenger RNA biogenesis [BR:
emac03019
]
134867827 (sympk)
Transcription machinery [BR:
emac03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134867827 (sympk)
Messenger RNA biogenesis [BR:
emac03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
134867827 (sympk)
U7-dependent histone pre-mRNA processing factors
134867827 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
Cnd1
INTS1_R4
Cohesin_HEAT
DUF2428
Motif
Other DBs
NCBI-GeneID:
134867827
NCBI-ProteinID:
XP_063744730
LinkDB
All DBs
Position
7:25856620..25873464
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AA seq
1240 aa
AA seq
DB search
MEYSSQEGETQLNPQQVTPQVVDMTTSERVVDLLNQAALIPTDEKLNVLKQVQELIINKD
PSLLDNFLDELIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLLRDDSVNVV
KKAILTLTQLYKVSLQWLVRSKAVSERQEASWDMVTQMKGDVLALLDSENDGVRTHAIKF
TESLIITLSPRTSDSDVPKRQEGDISLDKVPRDHSYIRYSALCEEGKAALEKLLKFMVHP
AISSINLTTTLGSLATIARQRPMFMSEVVQAYEMLHANLPPTLAKSQVSSVRKNLKLHLV
AVLKHPCSLEFQGQISTLLLDLGMAQSEITRSTPAPREPRKRPRHDEYTEGKKVKMEPAL
NEDDEDKEEPPPQSLPKPAAVPGAQSAIDLTAEFLHPLLSPENVANLVLISMVYLPDIMP
ASFQATYTPVESAGTDAQIKHLARLMATQMTAAGIGPGLEQCKAREDNAGKDNEDEAGSK
DLLIKRKLPGVMVGQAISVVGGYEKEKAPAEAPATVKRLPEPIVPTAQTKMTGASGRKKV
FRLSDVVQPLSDTQIEKLTSRAVKRILHSEKAIAQSGMSHVRVKLLSKLVTQFEGMMKED
VLAFILEDIRTRSDLAFSLLYQEYNTYLSQLPNGLLDSYDHCLCTLLSGLQEKPEQRDGL
FTKLVLEAPLITESALEVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSH
EKEKVRTTALAFLKRMYEKDQLRDYIEKFALNYMQLLVHPNPPSLLFGADKDTEVAAPWT
EETVRQCLFLYLSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLL
LVENCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEV
IQALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLIALHNIDSTKCDMKSII
KATNLCFGEKNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNILSRL
ISKQVWKYPKVWEGFVKCCQRTKPQSYSVLLQLPAALLSSVFERCPEMREPLLQHVLSFT
THQQAHIPASIMAVLEANKKPEPKSVEPVVVIEPVVEQEMEPLPASVPVCVEAEARTAAV
GEPEQQQHSTIKEEEEPMEQEDSAPMTQEECGDAVSQEELTRQDETPRPTPTPTPSPEPA
AAEEPMEASQAESSDLQEPEHAGEAEVTGPEAGSGSENGD
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atggagtattcttctcaggagggggaaactcaactgaatccccaacaagtcacccctcag
gtagtcgatatgaccaccagtgaacgggtggtggatcttctgaatcaggctgccctaata
ccaacggatgaaaagctaaatgtgctcaaacaggttcaggagctcatcattaacaaggat
ccctcccttcttgacaatttcttggatgagttgatcgcctttcagacagataagtctata
gaagtgcgaaagtttgtcattggcttcatagaggaagcatgtaaaagggacaatgagctc
cttctcagactgattgccaatctgaacatgttgctgagagatgacagtgtgaacgtggtg
aagaaagccatcctcacactcacacaactgtacaaggtgtctctgcagtggctggtgcgc
tctaaagcagtatccgagaggcaggaggcatcctgggatatggtcacacagatgaaagga
gatgttctggccttgctggactctgaaaatgacggcgtgcgcactcacgccatcaagttc
acagaatcattaatcatcactctgtcgccgcggacgtcagactctgatgttcccaagcga
caggaaggggacatcagcctggataaagttccaagagatcactcatacattcgctactct
gctctgtgtgaagaggggaaggctgcactggagaagctgctgaagttcatggtccatccg
gccatttcaagcatcaacctcaccaccacgctgggctccctcgccaccatcgcccggcag
aggcccatgttcatgtccgaggtggtgcaggcgtatgagatgttacacgcaaacttgcca
ccaacactggccaagtctcaggtcagcagtgtgcgaaagaacctgaagctgcacttggtg
gcggtcctgaagcacccctgcagcctggagttccagggtcagatcagcactctgctgctg
gacctaggaatggcccagagtgaaatcacacgctccacacctgcaccccgagagccgcgc
aaaaggcctcgccatgacgaatacacagaggggaaaaaggtcaagatggagccagcactg
aatgaagatgatgaggacaaagaggagcccccccctcagtcgctccctaaaccagctgct
gttccaggggcccagtctgccatcgacctgactgctgagttcctgcacccgctgctgtcc
cctgagaacgtagccaacctggtgctcatcagcatggtgtatctgccagacatcatgccg
gcctccttccaggccacatacacacctgtggagtcagcaggcaccgacgcccagattaaa
catctggccaggctgatggccacgcagatgactgcagctggcatcggtccagggctggag
cagtgcaaagccagagaagacaatgcaggcaaagacaacgaggatgaagctgggtccaaa
gacctgctcatcaagcgcaaacttcctggggtgatggtaggacaggccatctctgtggtg
gggggttatgaaaaagaaaaggctcccgcagaggcccccgccaccgtcaagaggctccct
gaacccatcgttcctactgctcagaccaagatgacaggggcgagtggaaggaaaaaagtg
tttagattgtcagatgtagtccagcctttatctgacacccagatagaaaagttaacctcc
agagccgtcaaacgcatcctgcactcagagaaggccatcgctcagagcggcatgtcacat
gtcagagtgaagctcctctccaagcttgtaacacagtttgaagggatgatgaaagaagac
gtgctggcatttatcctggaggacatcaggaccaggagtgacctggccttttctctcctc
taccaagagtacaatacttacctcagccagctgccaaacgggctgctggacagttatgac
cactgcctctgcaccctgctgtcaggcctgcaggagaaacccgagcagagggacggactc
ttcaccaagctggttctggaggctccccttataacggagtcagcgctggaagtaatccgt
cggtactgtgaggacgagtctcgggtctatttgggcatgaccactctgaaggagctgatc
gtcaaacggccctcgcgacagttccagtatctgcacgtcctgctggatctcagctcacat
gagaaagagaaggtgaggacaactgccctggcttttctgaagcgtatgtatgagaaggat
cagctgagggactacattgagaagtttgccctgaactacatgcagcttctggtccatccc
aaccctccatctctgctctttggggccgacaaggacacagaggtggctgctccctggact
gaagagacggtgagacagtgtctcttcctctacctgtccctgctgcctctcaaccaccgg
ctagtccacgagctggcgtccgtctacaccgaggccattgctgacatcaagcgcagtgtg
ttgcgagccatagagcagcctatccgtgggatggggatgaattcgccggagctgctgctg
ttggtggaaaactgtcctaaaggggcagagacgttagtgacccgctgtctccacattctg
accgataaagtgcccccgtctccagagctggtggagagagtgcgagacctttaccacaaa
cgagtgccagatgttcgtttcctcattccagtcatcaatggcctcgaaaagaatgaagtc
atccaggctctccccaagctcatcaagctcaaccccatcgtggtgaaggaggtgttcaac
cgtctcttagggacccagcacagtgaggggagttcatctgtgtcccctctcaccccggga
gacctgctgattgccttacacaacattgactcaaccaaatgtgacatgaagtccatcatt
aaagctaccaacctgtgcttcggtgagaaaaacgtgtacacatcagaggttctggcggtg
gtgatgcagcagctgatggagcagagccccctccccatgctgctcatgcgcaccgtcatc
cagtccctcaccatgtatccccgactgggaggcttcgtcatgaacatcctgtcccgcctc
atcagcaagcaggtgtggaagtatcctaaggtgtgggagggctttgtgaagtgctgccag
aggaccaaacctcagtcgtacagcgtgctgctgcagctgccggctgccctgctcagcagc
gtgtttgagcgctgcccagagatgagggagcctctcctgcagcacgtcctctccttcacc
actcaccagcaagctcacatacctgcctctatcatggcagtcctggaagcgaataaaaag
ccagaaccaaagtctgtcgagcctgtggtggtcatagagcccgtcgtagagcaagagatg
gagccacttcctgcctcggttcctgtctgtgtggaagcagaggctcgcactgcagcagtg
ggagaaccggagcagcaacagcatagcaccataaaggaggaggaggaaccaatggagcag
gaggactctgctccaatgacacaggaggagtgtggtgacgctgtatcccaggaggagttg
acaagacaagatgagaccccgcgtccaacgccaaccccgactccctcccctgaaccagca
gcagctgaggagccgatggaggcgtctcaggctgagtcctcagacctgcaggagcctgaa
cacgctggagaggctgaggtcacaggacctgaggctgggagcggcagtgaaaacggagac
tga
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