Eleginops maclovinus (Patagonian blennie): 134867969
Help
Entry
134867969 CDS
T09869
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134867969 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emac03019
]
134867969 (mtrex)
03041 Spliceosome [BR:
emac03041
]
134867969 (mtrex)
03009 Ribosome biogenesis [BR:
emac03009
]
134867969 (mtrex)
03016 Transfer RNA biogenesis [BR:
emac03016
]
134867969 (mtrex)
Enzymes [BR:
emac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134867969 (mtrex)
Messenger RNA biogenesis [BR:
emac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
134867969 (mtrex)
Spliceosome [BR:
emac03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
134867969 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
134867969 (mtrex)
Ribosome biogenesis [BR:
emac03009
]
Eukaryotic type
Pre-60S particles
Helicases
134867969 (mtrex)
Transfer RNA biogenesis [BR:
emac03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
134867969 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
134867969
NCBI-ProteinID:
XP_063744870
LinkDB
All DBs
Position
8:791649..809722
Genome browser
AA seq
1034 aa
AA seq
DB search
MADAFGDGLFSVFDDEQQTTTSKKIPASLTPEIGKVITKNGAEKDAGAAIKREADSDGGE
EVLFGKKARQDTVSANDLNLAEFMPQVKVEQVETVEGCSHEVALQNSDEYKPLKPRVGKA
AKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFD
EIHYMRDSERGVVWEETIILLPDNVRYVFLSATIPNAKQFAEWICHLHKQPCHVVYTEYR
PTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGSGGGKWDPRGRKGG
TRGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTEEEKRLVEEVFSNA
VDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSPSI
GKQLLKGTADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKMQK
YEAQYNSIEIPNEEGVVTYFKIRQQLAKLGKEIQEFTHKPKYCLPFLQPGRLVKVKNDDA
DFGWGVVVNFCKKSNVKSSTDSEPLYVVEVLVHCSKDSVKEAATEAAKPAAPGETGEMQV
VPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPVDDMGIKDP
ALKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTVLQM
DKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSGDELLLTEMVFNGLFNDLTVEQVTAL
LSCFVFQENASEMPKLTETLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHLMD
VVFAWANGATFAQICKMTDVFEGSIIRCLRRLEEVLRQMCSAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcttttggagacggtttgttcagcgtgtttgacgatgaacaacaaactacc
acaagtaaaaagatacccgcttctctgactccagaaatcgggaaagttattactaaaaat
ggcgctgaaaaagatgctggtgctgccatcaagagggaggcggacagtgacggaggagag
gaggttctgttcgggaagaaagcccgacaagacaccgtctctgccaacgacctgaatctt
gcagagtttatgccccaagtgaaggtggagcaggttgagactgtggaaggatgctcgcac
gaggtcgctctgcagaacagcgatgaatacaaacccctgaagccacgagtggggaaagca
gccaaggaatacccttttgttctggaccccttccagcgcgaggccatcctgtgcatcgac
aacaaccagtctgtgctggtgtcggcccacacctctgctggaaagactgtctgtgctgaa
tatgccatcgccctggcgctcagggagaagcagagggtgatcttcaccagcccgatcaaa
gctctctccaaccagaagtacagagagatgtacgaggagttccaggacgtgggtctgatg
acgggagacgtcaccatcaaccccaccgcctcctgcctcgtcatgaccacagagatcctg
aggagcatgctgtaccgaggctctgagatcatgagggaggtggcctgggtggtctttgat
gagatccattacatgagagactcagagcgtggtgtggtctgggaggagaccatcatcctt
ctccccgataacgtgcgctacgtcttcctgtcggccaccatccccaacgccaagcagttt
gcagagtggatttgccacctccacaagcagccctgccatgtcgtctacacagagtaccgc
cccactccgctgcagcactacatcttcccagcagggggcgacgggctccacctggtggtg
gatgagaatggagacttcagagaggataacttcaacacagccatgcaggtgctgagagac
gccggggattctgggggaagcggaggagggaagtgggacccgagaggacggaaaggaggc
accagaggtccgtccagcgtgtttaagatcgtgaagatgatcatggagaggaacttccag
cccgtcatcatcttcagcttcagcaagaaggagtgtgaggcgtacgctctgcaggtggcc
aagctcgacttcaacacagaggaggagaagcgtctggtggaggaggtgttcagcaacgca
gtggactgtctgtcagacgaggataagaagctcccccaggtggagcacgtgctgcctctg
ctgaagagagggataggaatccatcacggaggtctgctgcccatcctgaaggagaccatc
gagatcctgttctctgagggactcatcaaggctctgttcgctacagagacgttcgccatg
ggcatcaacatgccggcccgcaccgtgctcttcaccagcgcccgcaagttcgacggcaag
aaccaccgcttcatcacatcgggcgagtacatccagatgtccgggcgagccggcaggaga
ggaatggacgaccgagggatcgttatcttcatggtggacgagaagatgagtccgtccatc
ggcaagcagctcctcaaggggaccgcagaccctctgaactcggccttccacctgacctac
aacatggtgctgaacctgctgcgggtggaggagataaaccccgagtacatgctggagaaa
tcgttctaccagttccagcactacagggccctacccggcgtcgtggagaagatgcagaag
tacgaggcgcagtacaacagcatcgagatccccaacgaggagggcgtggtgacctacttc
aaaatccgacagcagctcgccaagctgggcaaagagatccaggagttcacccacaaaccc
aaatactgcttacccttcctgcagcctggcaggctggtcaaggtcaaaaatgatgacgct
gactttggctggggggtcgttgtgaacttttgcaagaagtcgaacgtgaagtccagcacg
gactctgagccgctgtacgtggtggaggttctggttcactgcagtaaggacagcgtgaag
gaggctgccacggaggcggctaaacctgcagctccaggagagaccggggagatgcaggtg
gtcccagtgatgctgcacctcctgacctccatcagctccgtccgtctgtacatccccaaa
gacctgaggcccttcgacaacaggcagctgatgcttaagtccatacaggaggtgcagaaa
cgcttcccagacggagttcccctcctggacccagtggacgacatgggcatcaaagaccca
gcgctgaagaaggtgatccagaaggtggaggccttcgagcaccgcatgtactcccacccc
ctgcacagcgaccccaacctggagtccgtgtactcgctctgtgaaaagaaagctctgatc
gcagcagacgtccggacggcgaagcgggagctgaagaaagcccgcaccgtgctgcagatg
gacaaactgaagtgcaggaagagagtgctgcgacgcctcggcttcgccagcccgtccgac
gtcatcgagatgaagggacgcgtcgcctgtgagatcagcagcggggacgagctgctgctg
acggagatggtgttcaacggcctcttcaacgacctgacggtggagcaggtcacggcgctg
ctgtcctgcttcgtcttccaggagaacgccagtgagatgcccaaactgacggaaaccctg
gctgctcctctgagacagatgcaggagtgtgcaaagcgcatcgccaaggtctctgccgac
gccaagctggaggtggacgaggagacgtacctgaaccagttcaagccgcacctgatggac
gtggtgttcgcctgggccaacggagccacgttcgctcagatctgcaagatgaccgacgtc
ttcgaggggagcatcatccgctgcctgcggcgtctggaggaagtcctgaggcagatgtgt
tctgctgccaaggccatcgggaacacggagctggagaacaagttcgctgaaggaataacg
aagatcaagcgggacatcgtgttcgctgccagtctctacctataa
DBGET
integrated database retrieval system
