KEGG   Eleginops maclovinus (Patagonian blennie): 134867969
Entry
134867969         CDS       T09869                                 
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
emac  Eleginops maclovinus (Patagonian blennie)
Pathway
emac03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:emac00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    134867969 (mtrex)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:emac03019]
    134867969 (mtrex)
   03041 Spliceosome [BR:emac03041]
    134867969 (mtrex)
   03009 Ribosome biogenesis [BR:emac03009]
    134867969 (mtrex)
   03016 Transfer RNA biogenesis [BR:emac03016]
    134867969 (mtrex)
Enzymes [BR:emac01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     134867969 (mtrex)
Messenger RNA biogenesis [BR:emac03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     134867969 (mtrex)
Spliceosome [BR:emac03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    134867969 (mtrex)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    134867969 (mtrex)
Ribosome biogenesis [BR:emac03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    134867969 (mtrex)
Transfer RNA biogenesis [BR:emac03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    134867969 (mtrex)
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C DEXQc_Suv3 ResIII nSTAND3 AAA_22
Other DBs
NCBI-GeneID: 134867969
NCBI-ProteinID: XP_063744870
LinkDB
Position
8:791649..809722
AA seq 1034 aa
MADAFGDGLFSVFDDEQQTTTSKKIPASLTPEIGKVITKNGAEKDAGAAIKREADSDGGE
EVLFGKKARQDTVSANDLNLAEFMPQVKVEQVETVEGCSHEVALQNSDEYKPLKPRVGKA
AKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFD
EIHYMRDSERGVVWEETIILLPDNVRYVFLSATIPNAKQFAEWICHLHKQPCHVVYTEYR
PTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGSGGGKWDPRGRKGG
TRGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTEEEKRLVEEVFSNA
VDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSPSI
GKQLLKGTADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKMQK
YEAQYNSIEIPNEEGVVTYFKIRQQLAKLGKEIQEFTHKPKYCLPFLQPGRLVKVKNDDA
DFGWGVVVNFCKKSNVKSSTDSEPLYVVEVLVHCSKDSVKEAATEAAKPAAPGETGEMQV
VPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPVDDMGIKDP
ALKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTVLQM
DKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSGDELLLTEMVFNGLFNDLTVEQVTAL
LSCFVFQENASEMPKLTETLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHLMD
VVFAWANGATFAQICKMTDVFEGSIIRCLRRLEEVLRQMCSAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq 3105 nt   +upstreamnt  +downstreamnt
atggcggacgcttttggagacggtttgttcagcgtgtttgacgatgaacaacaaactacc
acaagtaaaaagatacccgcttctctgactccagaaatcgggaaagttattactaaaaat
ggcgctgaaaaagatgctggtgctgccatcaagagggaggcggacagtgacggaggagag
gaggttctgttcgggaagaaagcccgacaagacaccgtctctgccaacgacctgaatctt
gcagagtttatgccccaagtgaaggtggagcaggttgagactgtggaaggatgctcgcac
gaggtcgctctgcagaacagcgatgaatacaaacccctgaagccacgagtggggaaagca
gccaaggaatacccttttgttctggaccccttccagcgcgaggccatcctgtgcatcgac
aacaaccagtctgtgctggtgtcggcccacacctctgctggaaagactgtctgtgctgaa
tatgccatcgccctggcgctcagggagaagcagagggtgatcttcaccagcccgatcaaa
gctctctccaaccagaagtacagagagatgtacgaggagttccaggacgtgggtctgatg
acgggagacgtcaccatcaaccccaccgcctcctgcctcgtcatgaccacagagatcctg
aggagcatgctgtaccgaggctctgagatcatgagggaggtggcctgggtggtctttgat
gagatccattacatgagagactcagagcgtggtgtggtctgggaggagaccatcatcctt
ctccccgataacgtgcgctacgtcttcctgtcggccaccatccccaacgccaagcagttt
gcagagtggatttgccacctccacaagcagccctgccatgtcgtctacacagagtaccgc
cccactccgctgcagcactacatcttcccagcagggggcgacgggctccacctggtggtg
gatgagaatggagacttcagagaggataacttcaacacagccatgcaggtgctgagagac
gccggggattctgggggaagcggaggagggaagtgggacccgagaggacggaaaggaggc
accagaggtccgtccagcgtgtttaagatcgtgaagatgatcatggagaggaacttccag
cccgtcatcatcttcagcttcagcaagaaggagtgtgaggcgtacgctctgcaggtggcc
aagctcgacttcaacacagaggaggagaagcgtctggtggaggaggtgttcagcaacgca
gtggactgtctgtcagacgaggataagaagctcccccaggtggagcacgtgctgcctctg
ctgaagagagggataggaatccatcacggaggtctgctgcccatcctgaaggagaccatc
gagatcctgttctctgagggactcatcaaggctctgttcgctacagagacgttcgccatg
ggcatcaacatgccggcccgcaccgtgctcttcaccagcgcccgcaagttcgacggcaag
aaccaccgcttcatcacatcgggcgagtacatccagatgtccgggcgagccggcaggaga
ggaatggacgaccgagggatcgttatcttcatggtggacgagaagatgagtccgtccatc
ggcaagcagctcctcaaggggaccgcagaccctctgaactcggccttccacctgacctac
aacatggtgctgaacctgctgcgggtggaggagataaaccccgagtacatgctggagaaa
tcgttctaccagttccagcactacagggccctacccggcgtcgtggagaagatgcagaag
tacgaggcgcagtacaacagcatcgagatccccaacgaggagggcgtggtgacctacttc
aaaatccgacagcagctcgccaagctgggcaaagagatccaggagttcacccacaaaccc
aaatactgcttacccttcctgcagcctggcaggctggtcaaggtcaaaaatgatgacgct
gactttggctggggggtcgttgtgaacttttgcaagaagtcgaacgtgaagtccagcacg
gactctgagccgctgtacgtggtggaggttctggttcactgcagtaaggacagcgtgaag
gaggctgccacggaggcggctaaacctgcagctccaggagagaccggggagatgcaggtg
gtcccagtgatgctgcacctcctgacctccatcagctccgtccgtctgtacatccccaaa
gacctgaggcccttcgacaacaggcagctgatgcttaagtccatacaggaggtgcagaaa
cgcttcccagacggagttcccctcctggacccagtggacgacatgggcatcaaagaccca
gcgctgaagaaggtgatccagaaggtggaggccttcgagcaccgcatgtactcccacccc
ctgcacagcgaccccaacctggagtccgtgtactcgctctgtgaaaagaaagctctgatc
gcagcagacgtccggacggcgaagcgggagctgaagaaagcccgcaccgtgctgcagatg
gacaaactgaagtgcaggaagagagtgctgcgacgcctcggcttcgccagcccgtccgac
gtcatcgagatgaagggacgcgtcgcctgtgagatcagcagcggggacgagctgctgctg
acggagatggtgttcaacggcctcttcaacgacctgacggtggagcaggtcacggcgctg
ctgtcctgcttcgtcttccaggagaacgccagtgagatgcccaaactgacggaaaccctg
gctgctcctctgagacagatgcaggagtgtgcaaagcgcatcgccaaggtctctgccgac
gccaagctggaggtggacgaggagacgtacctgaaccagttcaagccgcacctgatggac
gtggtgttcgcctgggccaacggagccacgttcgctcagatctgcaagatgaccgacgtc
ttcgaggggagcatcatccgctgcctgcggcgtctggaggaagtcctgaggcagatgtgt
tctgctgccaaggccatcgggaacacggagctggagaacaagttcgctgaaggaataacg
aagatcaagcgggacatcgtgttcgctgccagtctctacctataa

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