Eleginops maclovinus (Patagonian blennie): 134868878
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Entry
134868878 CDS
T09869
Symbol
ythdc2
Name
(RefSeq) LOW QUALITY PROTEIN: 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
emac03041
]
134868878 (ythdc2)
Enzymes [BR:
emac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134868878 (ythdc2)
Spliceosome [BR:
emac03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
134868878 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_N
AAA_19
ATPase
Ank_2
nSTAND3
Ank_4
AAA_22
PhoH
Ank
Ank_5
AAA_30
SRP54
AAA_7
AAA_25
AAA_16
T2SSE
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
134868878
NCBI-ProteinID:
XP_063746304
LinkDB
All DBs
Position
8:complement(2181002..2194645)
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AA seq
1381 aa
AA seq
DB search
MSGPGSQRPSKSRKTGSLSNGMKNIHIDEGVKISVNIALENFRYNDEKEMEFPSSLTSTE
RAFIHRTAQSLGYISRSKGKGSNRFLTLRKKSCTDKPRPSMPLPLSQNSIYSIRSLLQRF
PVSNKERIDMQPNTRSGLSVSSETDGGCDRASGRLNNGIPTVPHRRSPSELDSFRRSLPV
AERQEEIVRVIRENRVVLVVGETGSGKTTQIPQFLLDDCSRKGEPCRIFCTQPRRLAAIA
VAERVAAERGERVGQTVGYHIRLESRVSPKTLLTFCTSGVFLRTLMSGDASLTNVTHVIV
DEVHERDGLTDFLLTKMRDVLQKIPTLKLILSSAALDVDLFLQYFGSCPIIHLKGRLFEV
KELFLEDILRLTGFKNKDMKKYKEETQRKEKKQKNLKEWCEVVVSSCDEERRMTPVSIPA
FLLENKQMENDTEQLEPWLLKEMDSCITNIFLNEDQDAFIQLFNLILYENVNVDYRHTDT
GSSALMVAAGRGFLPQMEQLLNMGADINLKASNDWMALDFATHFQQTEAIDLLKSSIPLG
EVSSRRDESSLVLHTAEIGPEQQELLKLYHHSFDDDFVDLGLIMDLMHNICSTTSEGALL
VFLPGYDDIVSLRDRLLYDDKRFSAHSERYQVFTLHSDMQTLDQRKAMKPSPPGIRKIIL
STNIAETSITINDVIFVIDSGKVKEKSFDTLSHVSMLKTVWISKASALQRKGRAGRCRPG
ICFHLFSRLRFSNMLEFQVPQLLRMPLQELCLQTKLLAPSSCPVADFLSKAPQPPSAHAI
RNAVQMLKTIDAMDQNEDLTDLGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAY
RDPFVLPAQGCQKKAALQCRKRYTSNTFSDHMALLRAFQAWQKARSDGWERSFCEKNFLS
QATMDMILGMRTQLLGQLRAIGFVRARGGSDIRDVNLNSENWAVVKAALVAGMYPNLVHI
NQDTSLPSSYREKKVHFHPTSVLNQSKLKENGPSKSSPQALPTDWLIYDEMSRGHRMASV
RCCSMVTPITVAIFGGCAKLPSSALQQPPSQRASDSLLDSDSESEELAEFSLDDWLIFQL
DSEAAGAVFELRQKWQNLFIKRIRCPSKPWTQQDEAIVRTVVSVLVAEEQGAGLQQPTGI
GQRPRPVSSEDDPQAFMKNSKSSPQPPSNTSTDWSCLMPASSSLLQRKAFCIDEAPLSVN
PLSKEPPSSSYSSCSVSLDSSAPSNSEKISTPLSSQLALSSVRHFIMKSSSLRNIEISQQ
KGIWSTTPSNESKLTKAFLENKLIILIFSVQGSGHFQGYARMTSIISHESCQDWGLMGLG
GVFSLEWIHRESVPFLCTQHILNPWNENKKVQISRDGQELEPQAGSQLLSLWERSSADPA
Q
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcccagggtcacagaggccgtccaagagccggaaaaccggttccctgtccaat
ggcatgaaaaacatccacatcgatgagggagtcaaaatctccgtgaacatcgcgctggag
aattttcgctacaacgatgagaaagagatggagtttccctcgtccctgaccagcacggag
agggcgttcatccatcggacggctcagtccctgggatacatttctaggagcaaagggaaa
ggatcaaatcgcttcctcaccctgaggaaaaagagctgtacggacaaacctcggccttcc
atgcccctcccactctcccaaaattccatatattccatccgcagccttctgcagcggttc
cccgtcagcaataaggagcgcatagacatgcagcccaacaccagaagtggcctgtcagtg
tcttcagaaactgacggcggctgtgaccgggcgagtgggcgcttgaacaacggcattccc
acggtgcctcacaggaggagtccgtcagagctggacagtttccggcgctcgctgcctgtt
gccgaacgccaggaggagatcgtccgcgtgatcagagaaaaccgggtggtgctggtggtg
ggagagaccggctctgggaaaactacccagatcccacagttcctgctggatgattgcagc
aggaagggcgagccctgcaggatcttctgtacgcagcccagacgcctggccgccatcgcc
gtggctgagagggtggcggccgagagaggagagcgagtgggccagacggtcggctaccac
atcagactggagagcagggtatcccccaagacactgctgaccttttgcaccagtggagtc
ttcctccggacgctgatgtctggagatgccagcctgacaaacgtcacgcatgtcatcgtg
gacgaggtgcatgagcgcgacggtctgaccgacttcctgctcactaagatgcgagatgtg
cttcagaagatccccacactgaagctgatcctctccagtgcagcactggacgtagaccta
ttcctgcagtacttcggctcctgccccatcatccatctcaaaggacgactgtttgaagtg
aaggagctcttccttgaggatatcctgcggctcacaggcttcaaaaacaaggacatgaag
aagtacaaggaagagacacagagaaaggagaagaaacagaagaacttaaaggagtggtgt
gaggtggtggtgagcagctgtgatgaggagagacggatgactcccgtgtctatcccggcc
ttcctgctggaaaataagcagatggagaacgacacggagcagctggagccgtggctgctg
aaggagatggactcgtgcatcaccaacatcttcctgaatgaagaccaggatgctttcatt
cagctcttcaacctcatcctctatgagaatgtgaacgtggactaccggcacaccgatacc
ggctcctccgctctgatggtggcagcgggacgaggcttcctcccacagatggagcagctg
ctcaacatgggggcggacatcaacctgaaggcgtccaatgactggatggccttagacttt
gccactcacttccagcagacagaggcgatcgatctgctcaaatcttccattcctctggga
gaggtgagcagcagacgggacgagtcctccctggtgctgcacactgcagagataggcccc
gaacagcaggagctgctcaaactctaccaccacagctttgacgatgactttgtggacctg
ggcctcatcatggatctgatgcacaacatctgctccaccaccagtgaaggcgctctcctg
gtttttctgcctggatatgatgacatcgtgtcactcagggatcgcctcctgtacgacgat
aagagattctccgcccactctgagaggtaccaggtgttcactctacattcagacatgcag
actctggatcagaggaaagccatgaagccctctccacccgggattaggaagataattctc
tccactaacatcgccgagacgagcatcaccatcaacgacgtgattttcgtcatagattca
gggaaggtcaaagagaagtcctttgacaccctcagtcatgtgtccatgttgaagacggtg
tggatctccaaagccagcgctctgcagaggaagggaagagccgggcgctgcagacctggg
atctgcttccacctcttcagtcgcctccggttcagcaacatgctggagttccaggttcca
cagctgctgaggatgccactgcaggagctgtgtctgcagaccaaactgctggccccctcc
tcctgtcctgtcgccgacttcctgtccaaagcgccgcagcctccttctgcacacgccatc
aggaacgctgtgcagatgctgaagacaatcgatgccatggaccagaatgaagacctgact
gatctgggctaccacctggctgacctccctgtggagccccacctgggcaagatggtgctg
tgcgccgtggtgctcaagtgtctggaccccatcctcaccatcgcctgcacgctggcctac
cgggaccccttcgtccttcctgcccaggggtgtcagaaaaaagctgccctgcagtgtcgc
aaacgctacacctccaacaccttcagcgaccacatggccctgctgagagccttccaggca
tggcagaaggcccgcagtgacggctgggagcggtccttctgtgagaagaacttcctgtcc
caggccaccatggacatgatactgggcatgaggacacagctgctgggacagctgcgggcc
atcggtttcgtgcgagcccgtggcggcagcgacatccgcgacgtgaacctgaactctgag
aactgggccgtggtgaaggcggccctggtggctggcatgtaccccaacctggtccatatc
aaccaggacacctccctgccctccagttacagagagaagaaggtccacttccatcccacc
tccgtcctcaaccagtccaagctcaaggagaacggcccatccaaatcttcaccccaggcc
ctccccacagactggctgatctacgatgagatgagccggggccaccggatggccagtgtc
cgctgctgctccatggtcacgcccatcaccgtggccatctttggaggctgtgccaaactc
cccagctccgccctgcagcagcctccttcacagagagcctctgacagtttactggacagc
gacagtgagagcgaggagctcgctgagttcagcctggacgactggctcatcttccagctg
gacagcgaggctgcaggcgcggtgtttgaactgagacagaagtggcagaacttgttcatc
aagaggatccgatgtccttcaaagccctggactcaacaggacgaggctatcgtccggacc
gtggtttcagtgctggtcgcagaggagcagggagccggcctgcagcaacccacagggatc
ggtcagcggccccggcccgtttcatcagaggacgatccccaggcttttatgaagaactca
aagagcagcccccaaccacccagcaacacttccactgactggtcttgtctgatgccagcc
tcttccagcctgctgcagaggaaggcgttctgcattgacgaggccccgctgtctgttaat
cctctgtctaaagaacccccctcctccagttactcctcctgctctgtgagcctggacagc
tccgctccttccaactcagaaaagatctcaacgcctctgtcctctcagctggccttgtcc
tccgtgcggcacttcatcatgaagagcagcagtctgaggaacatcgagatctctcagcag
aaggggatctggtccaccaccccgagcaacgagagcaaactcaccaaggccttcctcgag
aacaaactcatcatcctcatcttctccgtgcagggctccggacacttccagggctacgct
cgcatgacctccatcatcagtcatgagagctgccaggactggggcttgatggggctgggg
ggggtgttcagtctggagtggatccacagggagagtgttccctttctgtgcacacaacac
atcctgaacccatggaacgagaacaagaaggtccagatcagcagggacggacaggagttg
gagccgcaggcaggcagccagctgttgtctctgtgggagagaagctcagcggatcccgct
caataa
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integrated database retrieval system
