Eleginops maclovinus (Patagonian blennie): 134869324
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Entry
134869324 CDS
T09869
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03013
Nucleocytoplasmic transport
emac03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134869324
03015 mRNA surveillance pathway
134869324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emac03019
]
134869324
Enzymes [BR:
emac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
134869324
5.6.2.5 RNA 5'-3' helicase
134869324
Messenger RNA biogenesis [BR:
emac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134869324
mRNA cycle factors
Common to processing body (P body) and stress granule
134869324
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
NAT10_TcmA_helicase
ATPase
UvrD-helicase
AAA_16
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
134869324
NCBI-ProteinID:
XP_063746923
LinkDB
All DBs
Position
9:complement(14996984..15011943)
Genome browser
AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEGLHNGGVDESVAKTSQLLAELNFEEDEEDSYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNSGGRPSNMYFQTHDQIGMIGAGPGHMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSAHQGASQGNGP
NSQASQDGASQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctagacaccgaggaa
acagagttgctaggagcggacacccagggctccgaatacgactttactgacttcaccctt
cccagtcagacgcaaactcaaggccagacacagagccagctggacaaccaggttaatggt
cctgatgagggtcttcacaacggtggagtggatgaatccgtggccaaaacaagccagctg
ttggccgagctcaactttgaggaagatgaagaagactcgtactacaccaaagacctgcct
ttgcacgcatgcagctactgtggtattcatgatccagcgtgtgtggtgtactgcaatacc
agcaagaagtggttctgtaatggacgtggaaacacatctggcagtcacattgtgaaccac
ttggtgagagccaaatgcaaagaagtgacgctgcataaagatgggccgctgggcgagact
gtgctggagtgctacaactgcggctgtcgcaatgtcttcctcctcggctttatcccggcc
aaggccgactctgtggtggttctattgtgcaggcagccctgtgccagccagagtagcctg
aaggacatcaactgggacagctcacagtggcaacccctgatccaggaccgctgcttcctg
tcctggctggtaaagatcccatcggagcaggagcagcttcgggcccgtcagatcactgcc
cagcaaatcaacaagttggaggagctctggaaggacaaccccactgccaccttggaagac
ctggagaagcctggagtggacgaggagccccagcatgttctgctgcgctatgaggatgcc
taccagtaccaaaacatctttggaccgttggtgaaactggaggctgactatgacaagaag
ctaaaggagtcccagacccaagacaatataacagtcaggtgggacctgggtctgaataaa
aagcggattgcctatttcactctgcccaagacggattcaggtgatatgcggctgatgcaa
ggtgacgagatctgcttgcggtacaagggagacctggccccgctgtggaaaggcatcggt
catgtcatcaaagtccccgacaactatggagatgaaatagccattgagctgaggagcagt
gttggagcccctgtggaaatcccacacaacttccaggtggactttgtgtggaagtccaca
tcctttgacaggatgcagagcgccctgaagacgtttgcggtggacgagacctccgtgtct
ggttacatttaccacaaactgctgggccacgaggtggaggatgtgaccatcaagtgccag
ctgccaaagcgcttcactgcccagggcctgcccgacctcaaccactcacaggtgtacgct
gtgaagacggtgctgcagaggcctctcagtctgatccaggggcctcctggcactgggaag
actgtcacctctgccacgatcgtctaccacctgtcccgacagggcaacggaccagttctg
gtgtgtgctcccagtaacattgctgtggatcagttgactgagaagattgacaagactgga
ctgaaggtcgtcaggctgtgtgccaagagcagggaggccatcgagtctccagtctccttc
ctggctctgcacaatcagatcagcaacatggacagtatgccggagcttcagaaacttcag
cagctgaaggatgagaccggtgagctgtcgtctgctgatgagaagcggtacagggctctg
aaacgcaccgcagagagggagctgctcatgaatgctgacgttatctgttgtacctgcgtc
ggcgctggagaccctcgtctggccaagatgcagttccgctccatcctgattgatgagagc
acccaggccaccgagccagagtgtatggtgcccgtggtgcttggagcaaagcagctcatt
ctagtgggtgatcactgccagctcggtcctgtggtgatgtgtaagaaagcagccaaagca
ggtctgtcccagtccctgtttgagcgcctggtggttttggggatccgacccatccgcctg
caggtccagtaccgcatgcaccctgctctcagcgccttcccctccaacatcttctatgag
ggctccctgcagaatggagtcactgcagctgaccggatcaagaaagggttcgacttccag
tggccacagccggacaagcccatgttcttctacgtgactcagggtcaggaggagattgcc
agctcgggaacctcctacctgaacaggacggaggctgccaacgtagagaagatcaccacc
aggctgctgaaggctggagccaagcctgaccaaatcggcatcatcaccccgtacgagggt
cagcgctcctacctggtccagtacatgcagttcagcggctccctgcacaccaaactctat
cagcaagtggaaattgccagtgtggacgccttccagggcagggagaaggacttcatcatc
ctgtcttgtgtccgtgccaatgagcaccagggcatcggcttcctgaatgacccgcgtcgt
ctcaacgtggcgctgaccagagccaagtacggtgtgatcatcgtgggaaaccccaaggcc
ctctccaagcagccgctgtggaacaacctgctgaacaactacaaagagcagaaagtcctg
gtggagggacccctcaacaacctgagagagagcctcatgcagttcagcaagccccgcaaa
ctggtcaacaccatcaaccctgggggacgattcatgagcaccgcaatgtacgacgcccgc
gaggccctcatccctggctccgcctacgaccgcagcaattctggcggacgtccgtccaac
atgtacttccaaactcacgaccagatcgggatgattggggcaggacccggtcacatggct
gccatgaatattcccatacccttcaacctggtgatgccccctatgcctccgcccagttac
ctggggcagaccaacggccctgctgcaggtcgtggcgctatgaagggtaagcccgggcgt
ggaggacggcagagggtccgtgggtcggcccaccagggtgccagccagggtaacggacca
aacagccaggccagccaggatggggcctcccagccattctcccaggggccgctgactcag
ggctacatcaacatgagccagccttcccagatgagccagcctggcctctcccagccggag
ctgtcccaggacagctacctaggcgatgagttcaagtcccaaatcgacgtggctttgtcc
caggactctacttaccagggtgaacgtgcataccagcatggtggggtgactggactgtca
cagtactag
DBGET
integrated database retrieval system
