Eleginops maclovinus (Patagonian blennie): 134871820
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Entry
134871820 CDS
T09869
Symbol
pcf11
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134871820 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
emac03021
]
134871820 (pcf11)
03019 Messenger RNA biogenesis [BR:
emac03019
]
134871820 (pcf11)
Transcription machinery [BR:
emac03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134871820 (pcf11)
Messenger RNA biogenesis [BR:
emac03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
134871820 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
MIAC
Motif
Other DBs
NCBI-GeneID:
134871820
NCBI-ProteinID:
XP_063750819
LinkDB
All DBs
Position
11:complement(642596..653779)
Genome browser
AA seq
1470 aa
AA seq
DB search
MADKDACREYLSSLEDLTFNSKPHINMLTILAEENLHFAKEIVAIIEAQISKAPSAEKLP
VLYLVDSIVKNVGGEYLAVFAKNLITSFICVFEKVDENTRKSLFKLRSTWDDVFPLKKLY
ALDVRVNSVDPAWPIKALPPSVSNASIHVNPKFLKQSDEAPSPQPTPSKPPAPQAPAPLP
EAPAPPVAPATPSGLTQESLIRQQLLAKQKQLLELQQKKIELELEQTKAQLAGGFVMPPA
APVKPSPPVAPGVRPWLPPPQPDPKPPTRDPRLNRPAGPPTKEQPAGKKEGRPLTGNPAV
TLEKPPXPDKPRTPRKEAPKPPTSSPSTKSVPGKGKPAEPETKKDPRLKKRGGAKEEELK
EKKKKEEPPRGGGNKGKTLNGSKHEDEKLEFKAGGNARTHARKRSRSPPASPTKRKERRR
TRSSSLSPSPSHKPGKPPRREPEHGKKKSQSESRRSKRPAEDPPHSPRGHEGAKEGKEGK
EGLPPHRWRSGWEENKHPKPEDPHLKPAPPRHKPYSTPTRAATPRTPKHRLSVDANMQIP
EVLNSASKKDLLRRASKRLESGEISQEDFLNMAHQIKHFFQYQEEKQRSDGWDPLSGSLR
PLSSGTPRPLSSGTPRPPQGMDAAELSYYEHKLKLRKTQVNRRAAGEEWDGEESPEEGEA
TGVPLIKYNRGPRERPAERRGKEEEPRPPLGPMIEEYNHGKEFPTLKSLPGLRFRRRADP
REPSEREWTSPLTERQRSSEEKSGYEAPRRYDPRRPEGPPLSSVSPAEVPRFERERLSPP
KDSESPAPRFESPTSEHSDDGPLEAPPSHLPPPPKSILKAPLRGGPLTTVRNSDSPGHTP
PQDGGPPPPRFDGPPGPNRPPDWYEGGGRYDDPPSFDGPHQPGRFEGGGPHHLPERFDGP
PPPSGXAMRGFDGPPHPQGPGRFDGPPGQQPPLRFEGPGHFEGPMRRFDPGSGPMGFQQR
PMRFNGPPNQMGPMRFDGPMRFESPGQPAPRFDLGPHQGGPPHYECPSGQQGPMRFGHQL
NMQPPMRSMAPPLYDGPLAPQQNFNMAPQSMNPPQFPGGPMAFPQPNLQQGGNFNLQPAY
SQPGPGAFYNPAAPAMQQPMLGALGQPFLPQSSVPYVQSESPPPDPRPPPPENHFGQVDV
NDLLTKLISNGIIKPSQPEAPPTSKEPAAVLPAAPPVAVEEEEDEAEEEEDENLPDLTSF
KVDHMKLRYECVVQRLYSGNQCCLCSMRFTAKQTDLYADHLDWHFRQNHAGKVAGKRITH
RRWYYGLRDWVEFEEIADLEERAKSTFFEKVNEEEVQKNQAAAKEKEFQSVKATKDAVGE
LCEICQEPFETYWVEEEEDWFLKDAVRVDDKNFHPACFEDYKNTSSYVDATPSPSKLLTE
HPLTAFIKTEEGEEEEQGGGTSCAFASVKQEVAEPEACSLPVVKSEEEEEEEKEVLMEAG
RARPSDGARPSDGARPSDAAFLILRKSAFT
NT seq
4413 nt
NT seq
+upstream
nt +downstream
nt
atggcggataaagacgcctgcagggagtacctctcctctctggaggacctgacgttcaac
agcaagccgcacatcaacatgcttaccatcctggccgaggagaacctgcacttcgccaag
gaaatcgtggctattattgaagcgcaaatcagcaaggccccgtccgccgagaagcttccc
gttttgtacttagtggattccatagtgaagaatgttggaggagagtaccttgcagtgttt
gctaaaaacctaatcacttcatttatatgtgtctttgaaaaggtggatgagaacaccagg
aagagcctcttcaagctgcgctccacctgggacgacgtgttccctctgaagaagctctac
gctctggacgtcagggtgaacagcgtggacccagcctggcccatcaaggcgctgccaccc
tccgtcagcaacgcctccatacacgtcaaccccaagttcctcaagcagtctgatgaggct
ccctctccacagccgactccctctaaacctcctgctcctcaggcccctgctcctcttcca
gaggcccctgcccctcctgtggcccccgcaaccccctccggcctgacgcaggagtctctg
atccggcagcagctcctggccaaacagaagcagctgctggagctgcagcagaagaagatt
gagctggagctggagcagaccaaagcccagctggcaggggggtttgtgatgccccctgca
gccccggtgaagcccagccctccggtggccccgggggtccggccctggctgcccccccct
cagcccgacccaaagccccccaccagagacccccgtctgaaccgaccagccggacccccg
accaaagagcagccggccgggaagaaagaaggccgtcccctcacaggaaaccctgctgtg
accctggagaaaccccccngacccgacaagccccggacccccaggaaggaggcgcccaaa
ccccccacctcctccccgagcaccaagagcgtcccggggaaagggaagccagcggagccc
gagaccaagaaggacccccgcctgaaaaagagagggggggccaaagaggaggagctgaag
gagaagaagaagaaggaggagcctccgaggggggggggcaacaaagggaagactctgaac
ggatccaaacacgaagacgaaaagctggagttcaaggcgggggggaacgcccggacccac
gccaggaagcgctcccgctccccccccgcctcccccaccaagaggaaggagcgccgtcgt
acccggagcagctccctgtccccgtccccctcccacaaaccggggaaacccccccgacgg
gagcccgagcacggcaagaagaagagccaatcagagagcaggaggtccaagaggccggcg
gaggaccccccccactccccccggggccacgagggggccaaagagggcaaggagggcaag
gagggcctgcccccccatcgctggaggagcggctgggaggagaacaagcacccgaagccg
gaggacccccacctgaagcccgctcccccccgacacaagccctacagtacccccacccgc
gctgccacaccacgcacccccaagcaccgcctcagtgtggacgccaacatgcagatcccc
gaggtcctgaactcagcttccaagaaggacctgctgcggagggccagtaagcgcctggag
agcggagagatctctcaggaggatttcctgaacatggcccaccaaatcaagcacttcttc
cagtaccaggaggagaagcagcgctccgacggctgggaccctctcagcggctccctgcga
cccctcagctccgggacgccgaggcccctcagctctgggaccccgcggcccccccaaggc
atggacgcggccgagctgtcgtactacgaacacaagctgaagctgaggaagactcaggtc
aaccggcgggcagcgggggaggagtgggatggcgaggagagtccggaggagggggaggcg
acgggggtcccgctaattaaatacaaccgggggccccgagagagaccagcagagaggagg
ggcaaggaggaggagccccgcccccccctcggccccatgatcgaggagtacaaccacggg
aaggagttccccaccctgaagagcctgccgggactccgcttcaggaggagggctgacccc
cgggagcccagtgagagggagtggacgtctcccctgacggagcggcagcgcagcagtgag
gagaagagtgggtacgaggcccccaggaggtacgacccccgccggcctgagggccccccc
ctctcttccgtgagccctgctgaggtgccccggtttgagcgggagcgcctgtcccccccg
aaagactctgagagcccggccccccgcttcgagagccccaccagcgagcactctgatgac
gggcccctagaggcccccccatctcacctgccccctcctcctaaatctatcctgaaggcc
ccgctccgcgggggcccgctgaccaccgtccgtaacagcgactccccaggacacacaccc
ccccaagatggaggaccccccccaccacgcttcgatgggcccccaggccctaacaggcct
cccgactggtacgaaggtgggggccgctacgacgaccccccatccttcgacgggccgcac
cagccgggccggtttgaaggtggggggccacaccacctgccggagcgttttgacgggccc
cccccaccctcagggnncgccatgagaggcttcgacgggcccccccaccctcagggcccg
gggaggttcgacggaccacccggccagcagccccccctgaggttcgagggcccagggcac
ttcgaggggccgatgcggcggttcgaccccggctccggaccaatgggcttccagcagcgg
cccatgcgcttcaacggccccccgaaccagatgggtcccatgaggtttgacggtcccatg
cgcttcgagtcccccgggcaaccggcccccagatttgacctcggcccccaccaggggggg
cctccacactacgagtgcccctccggccagcagggccccatgaggttcggccaccagctc
aacatgcagccccccatgaggtcgatggccccgcccctctacgacggacccctggccccc
cagcagaactttaacatggccccccagtccatgaaccctccccaattccccgggggccct
atggccttcccacagcccaacctgcagcagggtgggaacttcaacctgcagccggcctac
agccagccgggccccggggccttctacaaccctgcggcccctgccatgcagcagccgatg
ctgggggccctcggtcagcccttcctgcctcagagctccgtgccttacgttcagagtgag
tcccccccccccgatccccggcccccccccccagagaaccactttggtcaggtggatgtg
aacgatctgctcactaaactcatctccaacggcatcatcaaaccctcgcagcccgaagcc
ccccccaccagcaaagagcctgcggcagtcctccctgcagcgccccctgtggcggtggag
gaggaggaagacgaggcggaggaagaagaggacgaaaacctcccggacctcaccagcttc
aaagtggaccacatgaaactgcggtacgagtgtgtggtgcagcggctgtactctgggaac
cagtgctgtctgtgcagcatgaggttcaccgccaagcagacggacctgtacgcagaccac
ctggactggcacttcagacagaaccatgcaggcaaggtggccggcaagaggatcacacac
cgccgctggtactacggactgagggactgggtggagttcgaggagatcgcagatctggag
gagcgagcgaagagcaccttcttcgagaaggttaacgaggaggaggtgcagaagaaccag
gccgccgccaaggagaaggagttccagagcgtcaaggccacaaaggacgccgtgggggag
ctgtgtgagatctgccaggagccgtttgagacatactgggtggaggaggaggaggactgg
ttcctgaaggatgccgtcagggtcgacgacaagaacttccaccccgcctgttttgaagat
tataaaaatacgtcctcgtacgtcgacgcgacgccgtcgcccagcaagctgctgacggag
cacccgctgaccgccttcatcaagaccgaggaaggagaagaggaggagcaagggggcggg
acttcctgtgcgttcgcctcagtgaaacaggaggtggccgagcccgaggcgtgttcactt
cctgtggtgaagagcgaggaggaggaggaggaggagaaggaggttttaatggaggcgggt
cgggcgaggccgagtgacggtgcgaggccgagtgacggtgcgaggccgagtgacgctgct
tttctgattttaaggaaaagtgcttttacgtga
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