Eleginops maclovinus (Patagonian blennie): 134872371
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Entry
134872371 CDS
T09869
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03440
Homologous recombination
emac03450
Non-homologous end-joining
emac04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
134872371 (rad50)
03450 Non-homologous end-joining
134872371 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
134872371 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
emac03032
]
134872371 (rad50)
03400 DNA repair and recombination proteins [BR:
emac03400
]
134872371 (rad50)
DNA replication proteins [BR:
emac03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
134872371 (rad50)
DNA repair and recombination proteins [BR:
emac03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
134872371 (rad50)
BRCA1-C complex
134872371 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
134872371 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
ABC_tran
AAA_22
AAA_16
AAA_29
zf-met
AAA_13
Motif
Other DBs
NCBI-GeneID:
134872371
NCBI-ProteinID:
XP_063751720
LinkDB
All DBs
Position
11:11208407..11231890
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQVISFFTPLTVLVGPNGAGKTTIIECLKYATAGDLPPG
SKGAAFVHDPKDAHETDVRAQIRLLFSDVNGEKVSIHRSMSCTQKAKNYTFKSLEQVITR
IKDGEKVSLSSKCGELDREMISSLGVSKPVLNNVIFCHQEESNWPLSEGKALKDKFDSIF
AATKYIKALDTMRLLRLKQTQTVKECQVELRYLKQNKEKAQQIRDTMASKEAQLMASKDN
IQKVDGQIDPLENLLTDIEMKLGKVMKLDNEIQALDSRKKQMEEDNKELEETMEQVFQGS
DEQLQENYQNHQRTVKDKERRLTDCQKELERAVRECQRLNRAKADLLVEQGRLQLESDRQ
NKNIKNRDTQVRSLSSSLEMEGYDRPPFTSLQLESFNRHVTLRLDQEKETVNQVMADLQE
KEQQKQQSIDDMRDKKTGLERTVELKRDSQAKKQNELRNVRTELQRLEGSSSRLQELENE
LAKVERELESVVQSSNVEELKAEVVELQREKAELDRVQRQLDQEMGMLNTHTTARTQMDM
LTKDKTEKEEQVRKIKSRHSEELVSLLGHFPNKRELEDWIYSKSKEINSTRDRLAKFNKD
LASSEQNKSHVAAEVRKKEQQLASDEEKFFNVCGSQDLEQDLGKLREDLDKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSDSDLQEVISDMQSKLRLVPDKLKNTETDLK
RKERKREEMMALRPVRQSIVQFQEKDLPELRNRLQTVNRDIERLKGDVEEQETLLGILMS
EEETAKACLQDISLMDRYLMDLKELERKIAQQSTKLQGVDLTRTIQQVSQEKQETQHKLD
TTSSKMELKRKLIQDQQDQIQMLKSSVNETRAEKLQLSSDMQKQQQLEEQCVECTTEIQT
LTRDIREAKEQLSPLSASLEKLQQEKLELVERRRQRQEEGHEKINGIKEKAKSISNLEKD
IKKYVEDGKEEYKVQKDFELQETNTQLHEAEKHKEKITKEMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVVAKREVLLKDIGNMQVLQLRQERRDADRKLEELKKNRSMAVGRQKG
FEEEILHHRKELREDQYNKADERYKNKIIKMRTTELVIKDLNLYYKALDLTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDGNTSAEVRRRVYNYRVVMVKGETALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRDNIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQYQNSEITKCSITSLSTYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatagacaagatgagcatcttaggggtgaggagttttgggatagaggataag
gacaaacaagtcatttctttcttcactccactgactgtgcttgttggacccaatggagca
gggaaaacgactattattgagtgccttaagtatgcaacagcaggagaccttccacctgga
tctaaaggagctgcatttgttcatgatccaaaggacgcccatgagacagatgtgcgagca
cagatccgtctgttattctcagacgtcaacggagagaaagtgagtatccatcgctccatg
tcctgcactcagaaggcaaagaactacacctttaaaagcttggagcaagtcattacccga
ataaaagatggtgagaaggtgagcttgtcatcaaagtgtggcgaactggatcgggagatg
atttcttcactgggagtgtcaaagcctgtgctgaataatgtcatcttttgtcaccaagaa
gagtccaactggcctctttccgagggcaaagcactcaaagacaagtttgactccatcttc
gctgcaaccaagtacatcaaagctctggatacaatgcgtctgttgcgtctaaaacaaact
cagacagtgaaggagtgtcaggtggagctgcgctacctgaagcagaacaaggagaaagcc
cagcagataagagacaccatggcttccaaagaggcacagctgatggcctctaaagacaac
atccagaaagtagatggccagattgatcccctggagaatctactgacagatattgaaatg
aaactggggaaagtgatgaagctggacaatgagatccaggctttagacagcaggaagaaa
cagatggaggaggacaacaaggagctggaggaaaccatggaacaggttttccagggttca
gacgagcagctgcaggagaattaccagaaccaccagaggacggtgaaggacaaggagcgc
aggctgacagattgccagaaggagctggagagagctgttcgagagtgtcagagactcaac
agggcgaaggctgacctcctggtagaacaaggtcgtctacaactagagtcggatcgccaa
aataaaaacatcaagaaccgagacactcaggttcgctctttgtcttcctctctggagatg
gagggatacgacaggcctcccttcaccagtcttcaacttgaaagctttaatcgtcacgtc
acactgagactggatcaggagaaagagacggtcaatcaggttatggcggacctgcaggaa
aaggagcagcagaagcagcagtccattgatgacatgagagataagaagaccggtctggag
agaacagtggagttgaagagagacagccaggcaaaaaagcaaaacgaactgaggaacgtt
cggacagagttgcagaggcttgagggttcgtccagccggctgcaagaactggagaatgaa
ctggctaaagtggagcgagagctggagagcgtggttcagagctccaacgtggaggagctg
aaggccgaggtcgtggagctccagagagagaaggctgaactcgaccgcgtacagagacaa
ctcgaccaagagatggggatgctcaacacacacaccaccgctcgcacgcagatggatatg
ctgacaaaggacaagacagagaaggaggagcaggtccgtaagatcaagtctcgtcacagt
gaggaactggtgtcattgctgggccactttcccaacaagagagagctggaggactggatc
tattccaagtcgaaagaaatcaacagtacccgggaccgacttgccaaattcaataaggac
ctggcatcaagtgagcagaataaaagccacgtcgctgctgaggtacggaagaaggagcag
cagttggccagtgacgaagagaagttcttcaacgtgtgtggcagtcaagatctggagcag
gacctgggcaaactgcgggaagatctggataagatctccaaacaaagagccatgctagcc
ggagccacagcagtgtacacgcagttcatcagccagctgacagaggagagagagccctgc
tgccctgtgtgtcagaggacgttcccttcagactctgatctgcaggaagtcatcagcgac
atgcagtccaagctgcgcctggtgccagacaagctgaagaacacagagacggatctgaag
aggaaggagaggaagagagaggagatgatggctctcagacctgtcaggcagtccattgtg
cagtttcaggaaaaggatttgccagagttgagaaaccgcctgcagactgtgaatagagac
atcgagcggctgaagggagacgtggaggagcaggagactctgcttggtatcctcatgtca
gaggaggaaaccgccaaggcctgcctgcaggacatttctctgatggacagatacctgatg
gaccttaaagagttggagaggaaaatcgctcagcagtcaaccaaactccagggagtagac
ctgaccagaaccatccagcaagtcagtcaggagaagcaagaaactcagcacaagctagac
acaacatccagcaagatggagctgaaacgtaagctgatccaggaccagcaggatcagatt
cagatgctgaagagttccgtgaacgagacgagggcagagaaactccagctgagcagcgac
atgcagaaacagcagcagctggaggagcagtgtgtcgagtgcaccacggaaatacagacc
ctaacccgggacatcagggaagccaaggagcagctgtcccctctgtccgcctctctggag
aagctgcagcaggagaagctggagctggtggagcgcaggaggcagaggcaggaagagggt
catgagaagatcaatggcattaaagaaaaagcaaagtcaatcagcaacttggagaaagac
atcaagaaatatgtggaagacggcaaagaggaatacaaagtgcaaaaagactttgagctt
caagaaaccaacactcagctccacgaggctgagaagcataaagagaagatcaccaaggag
atggggaacatccgtcaggacatagacactcaaaaggtccaggagcgctggctgcaggac
aacctgaccttgagaaagcgtgtggaggagttaaaggaggttgtggccaaacgtgaggtt
cttttgaaagacataggcaacatgcaagtcctgcagctccgccaagagcgccgtgatgcc
gatcgcaagttggaagagttgaagaagaaccgcagtatggcagtgggtcgtcagaaaggc
ttcgaggaggagatacttcatcacagaaaagagctgcgagaagatcaatataacaaagct
gatgagcgctacaaaaacaagatcatcaaaatgaggacaacagagctggtcattaaagat
ctgaatctctactacaaggccctggacctaaccatcatgaaattccacagcatgaagatg
gatgagatcaacaagatcatcagagacctttggcgcagcacctacaggggccaagacatc
gagtacgtggagatccgctctgatgtggacggaaacacgtctgctgaagtgcggcggagg
gtttacaactacagagtcgtcatggtgaaaggagaaaccgctctggatatgaggggacgc
tgcagtgccggtcagaaggtgttggcatccctgatcatccgtctagctctggcagagacc
ttctgtctgaactgcgggatcctggccctggacgagcccaccaccaacttggaccgagac
aacattgagtcactggcacacgccctcgtcgagatcattaagagtcgctctcgccagcgt
aacttccagctgctgatcatcacccacgacgaggactttgtggagctgctggggcgctcc
agctacattgagcacttctaccgaatacgcaagaaccagtatcagaactctgagatcaca
aagtgcagcatcacctccctctcaacctatctccactga
DBGET
integrated database retrieval system
