Eleginops maclovinus (Patagonian blennie): 134873654
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Entry
134873654 CDS
T09869
Symbol
smarcb1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03082
ATP-dependent chromatin remodeling
emac03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
134873654 (smarcb1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
134873654 (smarcb1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
emac01009
]
134873654 (smarcb1a)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
emac03021
]
134873654 (smarcb1a)
03036 Chromosome and associated proteins [BR:
emac03036
]
134873654 (smarcb1a)
Protein phosphatases and associated proteins [BR:
emac01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
134873654 (smarcb1a)
Transcription machinery [BR:
emac03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
134873654 (smarcb1a)
SWI/SNF complex
134873654 (smarcb1a)
Chromosome and associated proteins [BR:
emac03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
134873654 (smarcb1a)
PBAF complex
134873654 (smarcb1a)
SWI/SNF complex
134873654 (smarcb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
134873654
NCBI-ProteinID:
XP_063753516
LinkDB
All DBs
Position
12:complement(5859608..5871147)
Genome browser
AA seq
373 aa
AA seq
DB search
MALSKTFGQKPVKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRKLASVEERKKI
VESSHDHGYTQLATSVTLLKASEVEEILEGNDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIHENATQSEVLVPIRLD
MEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
ILEEQTDQRVIIKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttagcaaaacgtttggacaaaaaccggttaaatttcagctcgaggaagatgga
gacttttatatgatcggatcggaggtgggaaactacctccgtatgttcagaggttccctg
tataaaagatacccgtcattatggagaaaactggcatcagtagaagaaaggaagaagata
gtggagtcatcacacgatcacggctacactcagctggccaccagtgtgaccctgctaaag
gcttcggaagtcgaggagatcctggaaggaaacgatgagaagtacaaagccgtctccatc
agcactgagccccccgcctacctcagggagcagaaggccaagaggaacagtcagtgggtc
cccacgctgcccaacagctctcaccacctggacgcagtgccctgctccaccaccatcaac
cgcagccgactgggccgcgacaagaagaggaccttccccctgtgctttgacgaccacgat
ccagcagtgatccacgagaacgccactcagtctgaagtcctggttcccatccgtctggac
atggagatcgagggacagaaactcagagacgctttcacctggaacatgaacgaaaagctg
atgacacccgagatgttcgctgagatcctctgcgacgacctggacctcaacccactcgct
ttcgtccccgccatcgcctccgccatccgacagcagatcgagtcttatcccacagacagc
atcctggaggaacagacggaccagagggtgatcatcaagttgaacatccatgtggggaac
atctccctggtggaccagtttgagtgggacatgtcggagagggagaactctccggagaaa
tttgccctgaagctctgctccgagcttggcctgggcggagagtttgtcaccaccatcgca
tacagcatccgcggtcagctgagctggcaccagaggacgtacgccttcagtgagaacccc
ctccccacagtggagatagccatcagaaacacaggtgatgccgaccagtggtgccccctg
ctggagacgctgacagacgcagagatggagaagaagatcagagaccaggacagaaacacc
aggcgaatgaggcggttggcaaacacggcacctgcgtggtag
DBGET
integrated database retrieval system
