Eleginops maclovinus (Patagonian blennie): 134875928
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Entry
134875928 CDS
T09869
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac04510
Focal adhesion
emac04512
ECM-receptor interaction
emac04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134875928 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134875928 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134875928 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
emac04147
]
134875928 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
emac00536
]
134875928 (col4a5)
Exosome [BR:
emac04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134875928 (col4a5)
Glycosaminoglycan binding proteins [BR:
emac00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134875928 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
134875928
NCBI-ProteinID:
XP_063756752
LinkDB
All DBs
Position
14:2549594..2588097
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AA seq
1682 aa
AA seq
DB search
MNKDLKSLRQLAVPLLLFALCVAVQRSESAACHGCVGSKCDCSGVKGTKGERGFPGLTGQ
PGVPGFPGPEGPIGGRGEKGSDGPQGLYGPKGIRGPSGLPGFPGTPGLPGLPGQDGPPGP
RGVAGCNGTKGERGYPGSGGILGQQGQPGVPGLPGQKGDPGDVISTNRFGEQGSVGLPGL
PGVPGSAGPPGLQGPLGPQGPRGPEGRPGPPGLPGPKGNMGLNFQGPKGEKGEPGLPGPA
GPPGQVGEQKRPAETEIQRGDKGDPGVAGPPGDPGYPGAPGPSGGQKGTKGEAGEAGKRG
KNGKDGDPGGPGFPGGKGESGLPGPPGRDGERGFKGDRGYPGPPGVVIGGATGGQVGPKG
ESGYPGSPGYKGERGPAGLSGPPGAPGIPAVGGGGNPGAPGFPGERGQKGDAGVPGLSLP
GPPGRSGSNGLQGLPGPPGPPGFSSPQQNCVAGEPGRPGVQGETGYPGESGQKGEKGQTC
VNCIAGTTGIQGPPGPAGSPGFPGIPGGPGAKGDSGYPGTPGSSGPAGPSGPQGAPGFPG
QKGDPGDAVTVNGVRGEKGDTGFPGTPGLPGLDGRPGRDGQPGVPGAKGTPGSLLVKGER
GTPGDIGPSGTPGDRGPPGAQGYGPQGSKGEKGVQGVSGRSGGPGGPGAKGEPGLAVAEK
GLQGTRGLDGSPGLSGSPGSPGQPGQNGFPGSPGIKGDPGLPGIGLPGPPGVKGFPGIPG
QNGPPAGPGRPGVDGLPGQPGFPGSKGEPGFGLPGPPGLPGVPGSKGFPGPKGDSGFPGG
PGSPGRSGFDGGPGSKGEPGTPGIPGARGPPGSPSIGSLGQPGPPGPPGPMGPPGFPGSN
GVKGDPGPPGLDIPGLPGERGGNGFPGSPGPAGTAGPPGGPGRDGQPGLPGQKGDMGSMG
TPGPSGGPGGPGGPGGPGFKGEPGFPGRDGSPGGPGGKGDRGDSGVMGPPGDSSPRLTIK
GDKGEPGLSGATGLSGQKGFPGASGDPGLPGSDGRPGLPGPPGPKGDSGIPGGPGGPGGP
GAKGSMGEMGFPGPSGQKGLSGQPGRSGTPGNPGGPGFPGSKGEPGSAGIGPPGAAGLKG
EPGQPGFPGNPGLKGTLGTPGLPGLPGGPGSKGDPGLPGFQGSPGIPGPKGLDGGPGGPG
LTGAPGRPGESGRPGGPGQPGEKGQAGRDGIPGPAGIKGDPGLPGYGGPGAPGLPGLPGS
KGDSGLPGPSGSPGFPGSKGDAGFPGIPGNSGNSGPPGPPGLALQGPKGLSGPPGPPGRA
GQSGPQGPRGPPGSGGVKGEKGIAGAPGQPGFAGQKGESGVPGFPGPAGLSGGSGQKGDI
GLPGVPGFPGPKGDSGLPGGSGLPGDPGEVGPTGPPGDPGVSPTPIVVKGERGPPGASGL
PGSRGGPGAPGREGLPGQPGDPGTAGPDGPPGFSGPNGRKGDNGPAGSPGQRGYPGPPGS
DGPQGLPGPPGSVSAAHGFLITRHSQGTEVPYCPEGTNPIYDGYSLLYVQGNERAHGQDL
GSAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPSSMAPIQGEGIKPFISR
CSVCEAPAMVIAVHSQTIQIPTCPGNWEALWIGYSFMMHTSAGAEGSGQALASPGSCLEE
FRSAPFIECHGRGTCNYYGNSYSFWLATVEPSEMFRKPQSETLKAGNLRTRVSRCVVCMK
RT
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagacttgaagagcctgcgccagctcgccgtgcctctgctgcttttcgccctg
tgcgtcgcggtgcagcgatccgagtcagcggcttgccatggctgtgtgggatccaaatgt
gactgcagtggagtaaaaggaaccaagggggagcggggtttcccgggtctcaccggacag
ccaggggtcccaggtttccccggacctgaggggcccattggaggcagaggagagaagggt
agcgatggacctcagggactttatggtccaaaaggaataagggggccatctggattgcca
ggattcccaggaacaccaggacttcctggtctgcccggccaggatggacctccaggaccg
agaggagtggcggggtgcaatgggacaaagggtgaaaggggttacccaggaagtggagga
atcctcggacagcagggacagccgggtgtacctggtctgcccggacagaagggtgaccca
ggtgatgtgatctccaccaatcgttttggagaacaaggttcagtgggactgcccggacta
ccaggagttcctggatctgccggaccccccggtttgcaaggcccactcggcccacaagga
cctagaggtcctgagggtcgtccaggtcctcctggccttcccggaccaaagggaaacatg
ggattgaacttccaaggccccaagggagagaagggtgaaccaggtctgccaggacctgct
ggtcctccgggacaagtgggagaacagaagaggccagcagagacggagatccagagagga
gacaagggcgaccccggtgttgcaggtcctcccggtgatcccggatatccaggagcccct
ggtccctcgggaggccagaaaggaaccaagggagaagcaggagaagcaggcaaacgaggt
aaaaacggcaaagatggcgaccccggtggtccaggtttccccggaggcaaaggagagtca
ggtctgccaggtcctccaggcagggatggagagagaggcttcaaaggtgatcgtggatac
ccaggcccaccaggcgtggtgatcggcggggcaacaggggggcaggttggccctaaaggt
gagtccggttaccccggatcacctggatacaaaggagagagaggaccagcaggtttatca
ggccctccaggagccccaggaatcccagctgttggtggtggaggcaaccctggagctcca
ggtttcccaggagagagaggtcagaagggagacgctggcgttccagggctttctctgccg
ggacccccaggacgatcaggatccaacgggctccagggattaccagggccccctggacct
ccaggtttctcgtcaccacaacagaactgcgtggctggagagcccgggcgccccggcgtc
cagggagaaacaggttaccccggagagtctggccagaaaggtgagaagggccagacctgt
gtgaactgcatcgctggtaccactggcatccaaggacccccaggacctgccggaagcccc
ggattccccggaattcccggcggtccaggtgcaaaaggagacagtggatacccaggaact
ccaggctccagtggacccgctggtccctccggtcctcagggcgctccaggtttccccgga
cagaagggtgaccccggagatgccgtcacagtgaacggtgtgaggggagaaaaaggtgac
accggtttccctggcacgcccggtcttcccggtctggacggtcgacccggtcgcgatgga
cagcccggcgttccgggagccaaaggaactccgggttccctgctagtgaaaggagaacga
ggcacccccggtgatataggtccctctggtaccccaggggacagaggtcctcctggcgct
cagggctacggacctcagggttctaaaggagagaaaggtgtccagggcgtctcaggaaga
tctggaggtcccggtggccccggtgctaaaggtgaacccggtctagccgtggcggagaaa
ggattacaaggaacacgaggactggacggctctccaggactgtccggctcaccaggttcc
cctggacaacccggacagaatggtttccctggatcaccgggaatcaagggtgaccccgga
cttcctggcatcggactcccaggacccccaggagttaaaggattcccaggtatccccggc
cagaacggacctccagcaggaccaggaagacccggagtggatggactccccggccagcct
ggattccctggatccaagggtgagcctggctttggactccccggcccccccggtctacct
ggagtccctggatctaaaggattccccggaccaaagggagactctggcttccctggcggc
cccggttcccctggacgatctggatttgacggcggtcctggatctaaaggtgagcccggt
acacccggaatacctggagctcgtggcccccctggatccccctccattggctctctggga
cagccaggcccccccggaccccccggcccaatgggaccaccaggattcccgggatcaaac
ggagtgaagggagaccccgggcccccaggtctggacatccctggtctgccaggagagaga
gggggtaacggtttcccaggatccccaggaccagccggaactgcaggacctcctggagga
ccgggacgtgacggccagcctggactgccaggtcagaaaggagacatgggctccatggga
actccaggaccctctggaggacctggaggccccggagggcccggcggccccggatttaaa
ggtgaaccaggattccccggcagagacggttcccccggcggtcccggtggtaaaggagac
agaggagactccggcgtcatgggacccccaggagatagctctccccgattgactataaag
ggagacaaaggagaacctggactatcaggtgcaacaggtctttcaggtcagaaaggtttc
cccggtgcctcaggtgatcccggtctgccaggatcagatggtcgccctggactccccgga
ccaccaggtcccaaaggtgattccggcatcccaggaggccccggtggtcctggaggtcct
ggagcaaagggcagcatgggagaaatgggattcccaggaccgtcagggcagaagggtctg
tcaggtcagccaggtcgatctggaaccccaggaaaccccggaggacctggtttccctgga
tccaaaggtgaacctggctctgctggaatcggaccccccggagccgctggactcaagggt
gaaccaggtcagccagggttcccagggaatcctggacttaaaggaactctaggaactcca
ggactcccaggattaccaggaggaccaggatccaaaggcgaccccggactcccaggattc
caaggttctcctgggattcccggtcctaagggtctcgatggcggtcccggtggtccaggt
ctcactggagctcctggtcgaccaggagagtctggtcgaccaggaggtccaggacagcca
ggagagaagggtcaggcgggtcgggacgggatccccggaccggctggaatcaaaggagac
ccaggtcttcctggttacggtggacccggtgctcctggacttccaggactgccaggctca
aagggagactccggtcttcccggcccatctggtagtcccggtttccccggctctaaggga
gatgctggtttccctggaatccctggtaactcaggcaacagtggccctcctgggcctcca
ggtctagctctgcagggccccaaaggactcagtggacccccaggacctcccggaagagca
ggtcaaagtgggccccagggtccccgtgggcccccaggaagcggcggcgttaagggagaa
aagggcattgccggcgctcccggtcagccaggctttgcaggacagaagggagagagtggc
gttcctggattcccaggtcccgctggtctttctggcggctctggtcagaagggagacatc
ggtctgcccggtgttcccggattccctggaccaaagggagattctggccttcctggcggc
agcggccttcccggggatcctggagaggtcggacctaccggtcctcccggtgaccccggt
gtatctcccactcccatcgtggtgaagggagagcgcggaccccccggtgcctcgggcctg
cctggtagtcgaggaggtcctggtgctcctggacgtgagggacttcctggtcagcctggt
gaccctggcactgctgggcctgatgggcctcctggtttcagcggccccaacggcaggaag
ggagacaatggtcccgccggcagccccggtcagcgtggttaccccggcccccctggttct
gacggtcctcagggtctccccggtcctccaggatcagtgtctgcagcccacggcttcctc
atcacccgccacagccagggaacggaagtgccctactgccccgagggaaccaaccccatc
tacgacggatactcgctgctgtacgtgcagggcaacgagcgggcgcacggacaggacctc
ggctcagccggcagctgtctccgccggttcagcaccatgcccttcatgttctgcaacatc
aacaacgtctgcaacttcgcctcccgcaacgactactcctactggctgtccacgcccgag
cccatgcccagttccatggcccctatccagggggagggcatcaagcctttcatcagcagg
tgttcagtgtgtgaagctccagccatggtgatcgcagtgcacagtcagaccatccagatt
cccacctgcccgggaaactgggaagctctgtggataggatactccttcatgatgcacacc
agtgctggtgctgagggttcgggtcaggccctggcctcccccggatcctgcctggaggag
ttccgcagcgctcccttcatcgagtgccacgggagaggaacctgcaactactacgggaac
tcctacagcttctggctggccacggtggaaccctctgagatgttcaggaagccccagtcg
gagactctgaaggcgggtaacctccggacacgtgtcagccgctgcgtggtctgcatgaag
agaacgtaa
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