Eleginops maclovinus (Patagonian blennie): 134876835
Help
Entry
134876835 CDS
T09869
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134876835 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
emac03021
]
134876835 (cpsf3)
03019 Messenger RNA biogenesis [BR:
emac03019
]
134876835 (cpsf3)
Transcription machinery [BR:
emac03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134876835 (cpsf3)
Messenger RNA biogenesis [BR:
emac03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
134876835 (cpsf3)
U7-dependent histone pre-mRNA processing factors
134876835 (cpsf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
134876835
NCBI-ProteinID:
XP_063758076
LinkDB
All DBs
Position
15:271897..281652
Genome browser
AA seq
687 aa
AA seq
DB search
MATKRKCDVTVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMEKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREERESRFCNTVQDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMTEPDEICTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVDIEVHNPRNTEAVTLNFRGEKLAKVMGSLTDR
KCVQGQRVSGILVKRNFNYHIVTPSDLSNYTDLCMSTVTQTQAIPYTGPISLLVSQLRCL
AGDVEQVEGAEKITVRVFKSITLVHEAGMVLLEWIANPLNDMYADAVTTVVLEVQSNPNA
QKFLEGKKEAFDMDLFVERLELMLHDMFGDDCVNFRDGKDLSVTVDGVTATIDPETRAVV
CLEDETLREMLEVSVHRLHDALSPACS
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaagcgtaaatgtgatgtgacggttcctgcagaggagagcgaccagctgctg
atccgtcctctaggagcaggacaggaagtgggacggtcctgcatcatcttggaattcaag
ggacgtaagattatgctggactgtgggatccaccccggtctggaggggatggatgctctg
ccgtacatcgacctgatcgacccggctgagatcgacctgctgctcatcagccacttccac
ctggaccactgcggcgctctgccctggttcctgcagaaaaccagcttcaaaggacgcacc
ttcatgactcacgcaaccaaagccatctaccgctggctgctgtccgactacgtcaaagtc
agcaacatctctgcagacgacatgctgtacacggagacggacctggaggagagcatggag
aagatcgagaccatcaacttccacgaggtgaaggaggtcgccgggatcaagttctggtgc
taccacgctggacacgtgctgggggccgccatgttcatgatcgagatcgcaggcgtcaag
ttgctgtacacaggagatttctctcgtcaggaggacagacatctgatggccgctgagatc
ccaagcgtcaaacccgacatcctgatcacggagtcgacctatgggactcacatccacgag
aagagagaggagcgcgagtctcgcttctgcaacacggtgcaggacatcgtgaaccgggag
ggccgctgcctgatccccgtcttcgccctgggccgagcccaggagttgctgctcatcctg
gatgagtactggcagaaccacccagagctgcacgacatccccatctactacgcctcctct
ctggccaggaagtgcatggcggtgtaccagacctacatcaacgccatgaacgacaaaatc
cgcaaggccatcaacatcaacaaccccttcgtcttcaagcacatcagcaacctcaagagc
atggaccactttgatgacatcgggcccagcgtggtgatggcgtcccccgggatgatgcag
agtggtttgtcccgagagctgttcgagagctggtgcacagacaagaggaacggcgtcatc
atcgccgggtactgcgtggaggggacgctcgccaagcacatcatgacggagcccgatgag
atctgcaccatgtcgggtcagaagctccccctgaagatgtccgtcgactacatctccttc
tccgcccacaccgactaccagcagaccagcgagttcatccgagctctcaaacccccacac
gtgatcctggtccacggcgagcagaatgagatggcccgtctgaaggcggcgctaatccgc
gagtacgaggacaacgacgaggtggatatcgaagtccacaacccgaggaacacggaggcc
gtcacgctcaactttagaggagagaagctggccaaggtgatgggctctctgacagacagg
aagtgtgttcagggtcagagggtgtccgggatcctcgtcaagaggaacttcaactatcac
atcgtgacgccctccgacctctccaactacacagatctgtgtatgagcaccgtgacgcag
actcaggccatcccgtacaccggacccatctccctgctggtcagccagctgcgctgcctc
gcaggtgacgtggagcaggtggagggcgcagagaagatcaccgtcagggtctttaagagc
atcacgctggtgcacgaggccggcatggtgctgctggagtggatcgccaacccgctgaac
gacatgtacgccgacgccgtcactacggtggtcctggaggtccaatccaaccccaacgcc
cagaaattcctggaggggaagaaggaagcgttcgacatggatctgtttgtggagcggctg
gagctcatgctgcacgacatgtttggagacgactgtgtgaacttcagagacggtaaagac
ctgagtgtgacggtggacggcgtcacggcaaccatcgacccggagacccgagccgtggtg
tgtttggaggacgagacgctgcgggagatgctggaggtgtccgttcaccgcctccacgac
gcactcagccccgcctgctcgtaa
DBGET
integrated database retrieval system
