Eleginops maclovinus (Patagonian blennie): 134877530
Help
Entry
134877530 CDS
T09869
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134877530 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emac03019
]
134877530 (xab2)
03041 Spliceosome [BR:
emac03041
]
134877530 (xab2)
Messenger RNA biogenesis [BR:
emac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134877530 (xab2)
Spliceosome [BR:
emac03041
]
Complex B
Other components
Prp19-related factors
134877530 (xab2)
Complex C
134877530 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
NRDE-2
TPR_MalT
TPR_1
LTN1_E3_ligase_6th
SNAP
Motif
Other DBs
NCBI-GeneID:
134877530
NCBI-ProteinID:
XP_063759136
LinkDB
All DBs
Position
16:complement(12507528..12514587)
Genome browser
AA seq
847 aa
AA seq
DB search
MPSLNGKPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNAGKSTLNMIYERALKELP
GSYKLWYNYLRERRKQIKGKCVTEPGYEEINNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENTEEYID
YLRSVGRLDEAALRLAAVVNDVSFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKDEEEDVDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNARQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYYEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVDDGERHTMFNIYIKRAAEIYGVTYTRAIYQKSIEVLPDMHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMTSQMMKATTTSTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQDK
PKPKEKILFVRSDTSRTELAELSKQANPDEIDIGDDDDEDDDNQGPEEVQLEQKSVPTAV
FGGLKED
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgctaaacggaaaacccgatgttatgtttgaggacgatgatcttccttatgaa
gaagagatcatcaggaacccgtactcagtcaagtgctggatgcgttacatcgaattcaaa
cagaatgcaggaaaatccaccctgaacatgatctatgagagggctctgaaagagctgcct
ggcagctataagctgtggtacaattatttgagagagaggcggaaacaaatcaaagggaaa
tgtgtcactgaaccaggatatgaagagatcaataattgccatgaaagggcattagtgttc
atgcacaagatgcccagaatatggctcgattactgccagtttcttgtttctcaatgcaag
atcacaagaagtcggcaaacatttgaccgtgccctcagagctcttcctgtaacacagcat
ccacgcatctggcctctgtatctccgctttgcccgtaacttgcccctgcctgagacagcc
attcgggtgtatcgcaggtacctaaagctttccccggagaataccgaggaatacatagac
tacttacgttctgttggccgcctggatgaagccgctttgcgactagcggctgttgtcaat
gacgtaagctttgtgtccaaagagggcaagtctaactatcagctgtggcatgagctctgc
gacctgatctcccagaaccccgataaagtgacatctctgaatgttggagccatcatcaga
ggaggcctcactcgcttcacagaccaacttggaaaactgtggtgttcattagctgactat
tacatcaggagtggtcactttgaaaaggctcgtgatgtatatgaggaggccatccttact
gtggtaactgtaagggatttcacacaagtgtttgatagttatgcccagtttgaagagagc
atgatcgcagctaagatggagaccactgctgagatgggaaaagatgaagaagaggatgta
gacatggagcttagactggcccgctttgagcagctgatagcccggcggccgctcttgttg
aacagtgttctcctgcgacagaaccctcataatgtacatgagtggcacaagcgggttaaa
ctgtatgagggcaatgcacggcagatcatcaacacatacacggaggcagtgcagacagtg
gatccaatgaaagccacagggaagcctcactccctctgggtttccttcgctaagttctat
gaggaaaatgagcagcttgatgatgcccggacaatttttgagaaggctacaaaggtgaac
tacaagcaggttgatgaccttgctgcggtgtggtgtgaatatggagaaatggagcttcgc
catgagaactatgaacaggcactgcgtatactgaggaaagccacagccattccatccaag
aaggctgagtactttgatgtatctgagccggtccagaacagagtttacaagtccttgaag
gtctggtccatgctggcggacttggaggagagtctcggcactttccagtccacaaaagca
gtgtatgaccgcatcattgacctccgcatcgccacaccacagatcatcatcaattacgcc
atgttcctcgaagagcacaactactatgaagaaagctttaaagcatacgagcgaggtatt
gctctctttaggtggccgaatgtttatgacatctggaacacttacctcaccaagttcata
gatcgttatgggggcaagaagctggagagagctagggatttatttgagcaagccctcgat
ggctgccctgccaagtttgccaagaccatttacctgttgtatgccaaactggaggaagga
tatggattggcacgacatgccatggctgtctatgaaagagcaacgcaggcagtagatgat
ggggaaagacacaccatgttcaatatctacatcaaaagagcagcagaaatttatggagtc
acgtacacaagagccatctaccagaaatctattgaggtccttcccgatatgcatgccagg
gacatgtgtctgcggttcgccgacatggagagtaaactcggggaaattgatcgggcccga
gcaatctactcctactgctcccagatttgtgacccacgggtgaccgcaactttctggcag
acatggaaagagtttgagattcgccatggaaatgaagacactattagagaaatgttaagg
atcaaacgcagtgtccaagcaacatacaacacccaggtcaacttcatgacctctcagatg
atgaaggccacaacaacctccacagtgtctgatcttgctccaggccaaatgggaattgat
gacatgaaaatgctggaacagaaagcacagcagctagctgcagaggccgagcaggacaaa
cccaagcccaaagagaaaattctctttgtcaggagtgacacctctcgcactgagttggct
gaactatccaaacaagctaatcctgatgagatcgacatcggtgatgatgatgatgaagat
gacgataaccagggaccagaagaggtgcagctcgaacagaagagtgtccctacagctgtc
tttggagggcttaaagaggactga
DBGET
integrated database retrieval system
