Eleginops maclovinus (Patagonian blennie): 134878976
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Entry
134878976 CDS
T09869
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03015
mRNA surveillance pathway
emac03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134878976 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
134878976 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emac03019
]
134878976 (cpsf6)
Messenger RNA biogenesis [BR:
emac03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
134878976 (cpsf6)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
134878976
NCBI-ProteinID:
XP_063761240
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Position
17:complement(2633571..2646663)
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AA seq
600 aa
AA seq
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MADGVDHIDIYADVEEEFTQEADYPVHEQIDLYDDVISPSANNGDAPEDRDYLDTLPTQG
GSEGGKSSQPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAIRSVGITDVLEIKFFENRAN
GQSKGFALVCVGSESSSRKLMELLSKRELHGQNPIVTPCNKQSLSQFEMQSRKTLSPHFQ
GTQSGQMSGEGKAGPPGGGLRGGGFPMGRGRGRFPGPPGPGGDRFPGPVGPGGPPPHFPG
SGMRPDLIRHQDGPLMDMSFNPFPPGGRNGNWRGRGGMQGPPRPPPGPPGPPGPPGPPPG
QGLPPPLPGPPNRGDRLPPPVLFPGQFGQPPMGPLPPGPPPPGYGPPPGPPPPQQGPPPP
GPFPPRPPGPIGPPMALAPPPHMPGPPPGGPPPAPHVNPAFFPPPGNNNMPPNDNRGPPG
PNDPYGRPPPYERGDYGPGGRDMEASRTPLSEAEFEEIMNRNRAISSSAISRAVSDASAA
DYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSASSPMMLLNARR
ERSRERDHSRSREKSRRHKSRSRDRHEDYYRERSRERDRHRERDRDRDREREREREYRHR
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtggatcacatcgatatctacgccgacgtagaggaggaattcacccag
gaagccgactacccagtccacgaacagatcgacctgtatgatgatgttatatccccatca
gccaataatggagatgctccggaagaccgggactatctggacacactgcctacacagggt
ggctcagagggagggaagagttcccaacccaacgtggtgtacacctacaccggcaaaagg
attgccctgtacataggaaacctaacatggtggacgactgacgaggacctgacagaagct
atccggtcggtcggcatcacagatgtgctggagatcaagttctttgaaaacagagccaat
ggccagtcaaaagggtttgcactggtgtgtgtgggctcagagtcatcttccaggaaattg
atggagctgctgtcaaagagggagctccatggtcagaatcccatcgtcacgccgtgcaac
aaacagtccctcagccagtttgagatgcagtcacgcaaaacgttatctcctcatttccaa
ggtacccagtcaggccagatgtccggggaaggcaaagctggtccccctggcggtggcctt
cgtggagggggtttccccatgggtcgaggcagaggcaggttccccggaccaccgggcccc
ggaggagaccgcttccctggtcctgttggacctggaggaccacctccacatttccctggc
tcgggaatgagaccagatctgattaggcaccaagatggccctctgatggatatgagtttc
aatcccttcccgccggggggcaggaacgggaactggcgtggcagaggtgggatgcagggt
ccaccacgtccccctcctggcccacccggaccccctggtcctccaggacctccacctggc
cagggtctaccccctcccctccctggtcctccaaatcgtggcgacaggcttcctccccct
gttctcttccctggtcagtttggccagcctcccatgggccccctgcccccaggcccccca
cctccaggttacggccctccccctggtcccccgccacctcagcagggcccaccacccccg
ggacccttccctccacgtcccccaggcccaattgggccccccatggctttggctccacct
ccacacatgccaggtcccccaccaggtggaccaccgccagcaccccatgtcaaccctgcc
ttcttccccccacctggcaacaacaacatgccccccaatgacaaccgcggcccccctgga
ccaaacgacccatacggacgtccgccaccatatgaaagaggggactacggtcctggaggc
cgggacatggaggcgtcacggaccccactgagcgaggcagagtttgaggagatcatgaac
aggaacagagccatctcctccagtgctatttctcgagcagtgtctgacgccagtgcagct
gactatggaagtgccatagagaccttggtgacagccatcagtctgatcaaacagtccaaa
gtgtcggccgatgaccgctgtaaggtcctcatcagttccctgcaggactgtctccacggc
attgagtcaaaaagctacggttctgcctccagtccaatgatgcttctcaatgccaggcga
gaacgttccagggaacgggaccacagccgctccagagaaaagagcagacgtcacaagtct
cgcagccgcgatagacatgaagactattacagagaacgcagccgggagcgcgaccgccat
cgtgagagggacagggaccgtgaccgtgagagagagcgtgaaagggagtaccgacaccgc
tag
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