Eleginops maclovinus (Patagonian blennie): 134879428
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Entry
134879428 CDS
T09869
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
emac03016
]
134879428 (rtcb)
Enzymes [BR:
emac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
134879428 (rtcb)
Transfer RNA biogenesis [BR:
emac03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
134879428 (rtcb)
Prokaryotic type
tRNA splicing ligases
134879428 (rtcb)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
134879428
NCBI-ProteinID:
XP_063762008
LinkDB
All DBs
Position
17:16994240..16998769
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKIGKNCWRIKKGFVPNMQVEGNFYVNEPLEKLMFEELRNACKGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPNSVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQALFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEENGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDQIVVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRASMTFLTRQAFSKVFVTTPDDLDMHVIYDVSHNIAKVEE
HMVDGRQKTLLIHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMT
ETFGTTCHGAGRALSRAKSRRNIDFQDVLDKLADQGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISQKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagttataacgatgagctgcagtttctggataagatcgggaagaactgctgg
aggattaaaaaagggtttgttcccaacatgcaggtcgaggggaacttctacgtgaacgag
cctctggagaagctgatgttcgaggagctgcgtaacgcctgcaagggaggaggcttcgga
gggttcctccccgccatgaagcagatcgggaacgtggcggcgctgcccggcatcgtccac
aggtccatcggtctcccggacgttcactccggttacgggtttgcgatcggaaacatggcg
gccttcgacatgaacgaccccaactccgtggtgtctccaggcggggtggggtttgacatt
aactgtggggtgcggctgctgaggacgaacctggacgagagcgacgtccagccggtgaag
gagcagctcgcccaggctctgttcgaccacatccctgtgggggtcggatccaagggggtc
atccccatgggggccaaggacctggaggaggccctggagatgggggtggactggtccctg
agggaggggtacgcctgggcagaggataaggagcactgtgaggagaacggccgcatgctg
caggccgaccccaacaaggtgtcctctaaagccaagaagagaggcctgcctcagttggga
actctgggagcggggaaccactacgccgagatacaggtggtggacgagatctacaacgac
tacgccgccaagaagatgggcatcgaccacaagggccaggtgtgtgtgatgatccacagc
ggcagccgggggctcgggcaccaggtcgccacagacgccctggtggcaatggagaaggcg
atgaagcgtgatcagatcgtggtgaacgaccggcagctggcctgcgctcgcatcgcctcc
gctgagggccaggactacctgaaggggatggcggccgccgggaactacgcctgggtcaac
agagcctccatgaccttcctcacacgacaggcattctccaaagtgttcgtcacgacgccg
gacgacctggacatgcacgtgatctacgacgtgtcccacaacatcgccaaggtggaggag
cacatggtggacgggcggcagaagacgctgctgatccaccgcaaaggatccaccagagcc
ttccccccccaccacccgctcatccccgtcgactaccagctcacaggacagccggttctg
atcggggggacgatgggtacctgcagctacgttctgaccggcaccgagaagggcatgacg
gagacgttcgggacgacatgtcacggagcgggtcgcgctttgtcccgggcgaagtctcgc
aggaacatcgacttccaggacgttctggacaaactggccgatcagggcatcgccatccgg
gtcgcttctccaaagctcgtcatggaggaggctcctgagtcgtacaagaacgtgacggac
gtggtgaacacgtgtcacgacgcaggaatcagtcagaaggcgatcaagctgcgaccgatc
gccgtcatcaaaggctga
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