Eleginops maclovinus (Patagonian blennie): 134879996
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Entry
134879996 CDS
T09869
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134879996 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emac03019
]
134879996 (ddx6)
03036 Chromosome and associated proteins [BR:
emac03036
]
134879996 (ddx6)
Enzymes [BR:
emac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134879996 (ddx6)
Messenger RNA biogenesis [BR:
emac03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
134879996 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
134879996 (ddx6)
Chromosome and associated proteins [BR:
emac03036
]
Eukaryotic type
Gene silencing
piRNA pathway
134879996 (ddx6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
134879996
NCBI-ProteinID:
XP_063762696
LinkDB
All DBs
Position
18:complement(20460367..20470818)
Genome browser
AA seq
481 aa
AA seq
DB search
MSTARTENPMILGLSNQNGQLRGSVKTAGVPGGGGGGPQQQLNQMKGTINNGNSLPAPTT
NAVIKPGDDWKKNLKLPPKDTRMRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPI
QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKRDCIQAMVIVPTRELALQVSQ
ISIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVIIATPGRILDLIKKGVAKVNQVQM
VVLDEADKLLSQDFVVMMEEMLGFLSKQRQILLYSATFPLSVQKFMNAHLQKPYEINLME
ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCF
YIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRI
GRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHSESGEEIK
P
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgccaggacagagaacccaatgattttgggcttgtccaaccagaatggacag
ctccgaggttcagtgaagactgctggagtgccaggtggaggtgggggaggccctcaacag
caacttaatcagatgaaaggcacaatcaacaatggcaattccctaccggcccctacaacc
aacgctgtcattaagcctggagacgactggaagaaaaatttgaaattgcccccaaaagac
accaggatgagaacatcggatgtgactgcaactaaaggcaacgagtttgaagactattgc
ctaaagagggagctgctaatgggaatctttgagatgggctgggaaaaaccttctccaatc
caggaggaaagcattcccatcgcactgtcaggaagagatatcttggccagagccaagaac
ggcacagggaagagtggagcctacctcattcccttacttgaacgcattgacctgaagagg
gactgcatacaggctatggtcatagtacccaccagagaactggctctgcaagttagccaa
ataagtatccaggtcagcaaacacatgggtggagtgaaggtcatggcaaccacaggggga
accaacctccgcgacgacatcatgagactcgatgaaacggtacatgtgatcattgccact
cctgggaggattttggacctcatcaagaaaggagtggccaaagtcaatcaagtgcagatg
gtcgtcctggatgaagctgacaaactcctgtctcaggactttgtggtcatgatggaggag
atgctgggcttcctgtccaaacagaggcagatcctgctctactctgctacctttccactc
agcgtgcagaagtttatgaacgcacacttgcagaaaccctatgagatcaacctgatggag
gagctgacactgaagggtgtgactcagtattacgcgtatgtaactgaaaggcaaaaggtc
cattgccttaacaccttgttctccaggctccagatcaaccagtctataatcttctgcaac
tcctctcagagagtagagctccttgccaagaagatctcccagctcggttattcatgtttc
tacattcatgccaagatgagacaggagcatcgcaaccgtgttttccacgacttcagaaac
ggtctctgccggaatcttgtctgcactgacctcttcacaagaggaattgacattcaagct
gtgaatgttgtgatcaatttcgactttcccaagctgggagaaacgtaccttcatcgcatc
ggtagatctggccggtttggacacttgggtctggccatcaacctcatcacctacgatgac
cgcttcaacctgaaggggatcgaggagcagctcggaacagagatcaagcccatccccggc
atcatcgacaaaagcttatacgtggcagagtaccacagcgagagtggcgaagaaatcaag
ccatga
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