Eleginops maclovinus (Patagonian blennie): 134880763
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Entry
134880763 CDS
T09869
Symbol
cnot4a
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134880763 (cnot4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
emac03000
]
134880763 (cnot4a)
03019 Messenger RNA biogenesis [BR:
emac03019
]
134880763 (cnot4a)
04121 Ubiquitin system [BR:
emac04121
]
134880763 (cnot4a)
Enzymes [BR:
emac01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134880763 (cnot4a)
Transcription factors [BR:
emac03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
134880763 (cnot4a)
Messenger RNA biogenesis [BR:
emac03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134880763 (cnot4a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
134880763 (cnot4a)
Ubiquitin system [BR:
emac04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
134880763 (cnot4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Med7
DZR_2
Rtf2
zf-CCCH_2
RDD1
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
134880763
NCBI-ProteinID:
XP_063763911
LinkDB
All DBs
Position
2:8610093..8628588
Genome browser
AA seq
799 aa
AA seq
DB search
MSHSPEIKDDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKINPSFLQPPACGTEKSKSKSNSTQRSNGSNGKDGWPTLSGHNKLANGLSEDRKS
PPLLDFLDQEGITSDGLETDMGSAQCSALSPFSSNCDSNSPSDKPESIGMVNGETFQQMP
CSDSPSPPPGLTKPSLVVPISVSDLTARSPFEGAAAESQSLFSDNSNFRHPNPLPAGLPP
FPSSPRSNSDWPMTPEPQSLFTSDTIPVSSSTDWQAAFGFGSSSKQQDDDLGFDPFDVTR
KALADLIEKELSVQDQSPLSSGLLSHSGSAHSHGLPPLNPNASHHFPSGLPRLPQLHHRA
IYSSFSFPGSHNSQASQQQQQPSSRHPWMGIPTRNNLTHLNHSASAASHSHFLDLNLPPQ
HNTGLGGIPISENSGSIDGLNVKEWQDGLRALLPNININFGGLPNSSSSSSSSSSNSVNH
IGGPVGPAGLSHSLSWESTASWMDPAIITGIPASAGNSLDCLQDDNPPHWLKSLQALTEM
DGPACSAMPVPHQPIHSSLLDAHLPLHHRATGGWAPYMAPPTANPASQFHSPPPGFQTAF
RPPGQPATELLQSAALDRH
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacagccctgagataaaggacgaccccatggagtgccctctgtgtatggaaccg
ctggagattgatgacgtcaacttcttcccctgcacctgcggctatcagatttgccgcttc
tgttggcatcgcattcgcacagacgaaaacggtctctgccccgcctgcagaaagccttac
ccagaggaccctgctgtgtacaagcccctgtcacaggaggagatccaaaggataaagaac
gaaaagaagcagaaacagaacgagaagaagcagaaggtgacagaaaaccgaaagcacctg
gccagtgtcagagtggtgcagagaaacctagtgtttgtggtcgggctctcgcagcgactc
gccgacccggaggtcctaaaacggccagagtattttggtaggtttgggaaaatccataaa
gtggtcatcaacaatagcacatcatacgcagggtcacaggggccgagtgccagcgcttat
gtgacttacatccgctctgaagacgctttaagagcaatacagtgtgtcaacaacgtggtc
gtcgatgggagaacactcaaggcttctttaggcacaacaaagtactgcagttactttctt
aaaagtatgcagtgtccaaaacctgattgtatgtatctacatgagctcggggatgaagca
gctagctttacaaaagaggagatgcaggcggggaaacatcaagagtatgagcagaaactc
ctccaagacctctataaaattaaccctagctttctacaacctccagcatgtggaacagag
aagtcaaagagtaaatccaactccacacagagaagcaacggtagcaacggtaaagatggc
tggccgacgctgtcaggacacaacaaactggccaatgggctttcagaggaccgcaagtct
cctccgctgctagactttctagaccaagaaggtatcacttcagacgggctagaaacagac
atgggttctgcgcagtgttctgcactgtcccccttctcctccaactgcgacagtaacagt
cccagtgataaaccagagtcgatcggtatggtgaacggagaaactttccaacagatgccc
tgcagtgactccccctctcctcccccgggtttaacaaagcccagcctggtagtgcccatc
agcgtgtcagacctcaccgcccggtcacccttcgagggagcggcagccgagtctcagtcg
ctcttttcagacaacagcaacttcagacatcctaaccctctacccgccggcctccccccc
ttccccagctccccccgcagcaactcggactggcccatgacccccgaaccacagagcctt
ttcacgtcagacacaataccagtgtcttcctccacagactggcaggcggcctttggcttc
ggctcctccagcaaacagcaggacgacgacctgggcttcgatcccttcgacgtcactcgt
aaagccttggccgacctgatcgagaaggagctgtcggtgcaggatcagagccccttgtcc
tcggggctcctctcccacagtgggagcgctcacagtcatggcctgcctcccctgaacccg
aacgcctcgcaccacttccccagcggcctgccacgcctcccccagctccaccacagagcc
atctacagctccttcagtttcccgggcagtcacaacagccaggccagccagcagcagcag
cagccatcctccagacacccctggatgggcatcccgacacgaaataacctcacacacttg
aaccactcagccagtgctgcctcacacagtcatttcctggacctgaatctgccccctcag
cacaacacagggctgggcgggatccccatctcagaaaacagtggctctatagacggctta
aatgtgaaagagtggcaggatggcctcagagctctgctgcccaacatcaacatcaacttc
gggggcctcccaaactcctcttcctcttcatcctcctcatcctccaacagtgttaaccac
atcgggggcccggtggggccggcaggtctctctcacagcctgagctgggaaagcacagcc
agctggatggaccctgctatcatcacaggtatcccagcctcggcggggaacagtttagac
tgtctccaggacgacaaccccccccactggctcaagtcgcttcaggctctcacagagatg
gacggtccggcctgctcggcgatgcccgttccccaccagcccatccacagcagtctcctc
gacgcccaccttcccctccatcacagagccaccggcggctgggctccctacatggccccc
cccacagccaaccccgccagccagttccactcccctccccccggcttccagaccgccttc
agaccccccggacagccggccacagagctgctacagagtgccgctttggaccgccactga
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