Eleginops maclovinus (Patagonian blennie): 134881824
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Entry
134881824 CDS
T09869
Symbol
nrde2
Name
(RefSeq) nuclear exosome regulator NRDE2 isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emac03019
]
134881824 (nrde2)
Messenger RNA biogenesis [BR:
emac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
134881824 (nrde2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_14
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
134881824
NCBI-ProteinID:
XP_063765462
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Position
19:complement(6271492..6284378)
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AA seq
1197 aa
AA seq
DB search
MALFPAFTEVERNKVEDSSKELDWLKNKSFQTEDALNLHSRFFEKTSERLNKKESSVRGY
VSSEEEEGDVPPKKKKKKSEKKKKKKKHKKKSGRHSDSSGNESEIIFPSDLKREQEADSP
QAAPLASCFSWLDDLKSPTEQPFCVDRKADPANWTYKSLYRGDITRYRRKGHSSLGLDPR
KQGVNWEVSESNKKQKGGDKKKAADRYFSTVSRQLLRSEPLVPTLPTIHKDGNAISTTSF
LPLGGDEESKGGKTGDRVQTSSVNPLGVYDATTALWLQGKGQQGQQEQQEQEVQTGQNAA
LTGRTEEFNRRLREQPGDTQLWIQFIRYQDQLSAAVFGGEAEQQGSDAAEHRKSSYRALL
EKKLSIAERAVSTNHGCIALQLERLRICQDLWEPSALAKEWKKLVFLHPNSAPLWREYLL
FTQSYFSNFSVSKVNSAYGKCLSTLSAVHDGSMVSHPALPGLEEDMLDIFIQQCHFLRQC
GHSEKAISLLQAMIDFTFYKPDSVRQLSTKQQVEFFEPFWDSGEERVGELGARGWKAWML
QQEKGGWLQPSAEEEEDEDEDEEEVKDRSQPRSTVWLDVETSREAAHWLPWRPDKAKGQT
EEDCDDPDRQVLFDDIGPSLICLPSPELQLRFLLRFLSFLGLPVDPVLSAAPCQPGLLLE
NLSLLTQGNELRRPLTSYDLPDPGVNSIGHMTTLQGTRKWVGLGKLGERFVTNVLKMVQT
VLPAQLQAALSLSWMQYEKLKVLRCLHGGNKKRLRSLGKSSKRVAKQLLKEPDNRSSLVL
WRGYGHLEWMLGNLDEARKVFSTATAMGGTKGLQSHALCELCLLWAQLEVEDGPPERGGG
LVDITVSPAVCVLTRLAEGSSTSSDQAISPVSILKARKSYEQALTAGLSALEQNYQTNKK
AGKEDLLGEKPRLRGLIGCHALFQYLTTGIQAANAIYSQARDRIGELHQKLTQDKQLNSM
EDVANIDVNQSKADSSLSCRQYVSRLASECEALAVQQAALLRYHNSISVFPLATLRQTLI
SALSMWASSAPLWSLYVQVENRYHSAGRARRFFHSVTRGNSSVVPRLFAIVAEQQRKQLV
DAAQRSCCHDAALPILPENGLSNRIRGLFESAIATEMGSHCPLLWRMYIHFLVSEGKVDK
ATGIFYKALQNIPWAKGLYMDAVQLFPEHLQEFVDLMTEKELRVRLPLEELDILLED
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggctctgtttccagcttttacagaagtagagcgaaacaaagtggaagattcgtccaag
gaattagactggttgaaaaataagagtttccagactgaagatgccctcaatcttcacagt
cgtttttttgaaaaaacgagtgagaggctgaacaaaaaggaatcaagtgtaaggggatat
gtgagctctgaggaggaggagggtgatgttccacccaaaaagaagaaaaagaagagtgag
aagaagaagaaaaagaaaaaacacaaaaagaagagcgggagacattcggacagcagcggc
aatgagtctgaaatcattttccctagtgacctcaaaagggagcaggaggcagacagtccc
caggctgctccgttagcaagttgtttctcctggttggatgacctaaagtcgcccacagag
cagccgttctgtgtggaccgaaaagcagacccagccaactggacctacaagtccctgtac
agaggagacataaccaggtataggaggaaaggtcactcgtccttgggtctggacccccgc
aaacagggagtaaactgggaggtgtcagagtcaaataagaaacagaaaggcggggacaag
aagaaagcagcagacagatacttctctacagtcagtcgccagctgctgaggtccgagccc
cttgttcctacattacctacaatacataaggacggcaatgccatcagcaccacctccttt
ctcccgctgggcggcgatgaggagagcaaaggaggaaagacaggtgacagagtgcagaca
tcctcagtgaatcctctgggtgtttatgacgccaccacagccctctggctgcaggggaag
gggcagcaggggcagcaagagcagcaggagcaggaggtgcagacggggcagaatgcagca
cttactgggaggaccgaagagttcaacaggcgactcagagagcagccaggagacacacag
ctctggatacaattcatacgataccaggatcagctaagtgcagcagtgtttggaggcgag
gcagagcagcagggcagcgatgcggcggagcatcggaagtcctcctacagagccctgctg
gagaaaaagctgagcatcgcagagcgtgctgtatccaccaaccacggctgcatcgctctg
cagctggagaggctcaggatctgccaggacctctgggagccctctgctctggccaaagaa
tggaagaagctggtttttctccatcccaacagtgctcccttgtggagggagtatcttctg
ttcacccagagctactttagcaacttctccgtgtcgaaggtgaactctgcgtatgggaag
tgtctgagcacgctcagtgccgtgcatgatggcagcatggtgtcccacccggccctgcca
gggctcgaggaggatatgcttgacatcttcatccagcagtgtcatttcctgcgtcagtgt
ggtcactcagagaaggccatttctctgttacaggccatgattgacttcaccttctacaaa
cctgacagtgtacgacaactgtccaccaagcagcaggtggagttctttgagccgttctgg
gacagcggggaggagagagttggagaattgggggcccgaggttggaaagcctggatgctc
caacaggagaagggagggtggcttcagcccagtgcagaggaagaagaggacgaggatgag
gacgaggaggaggtgaaggatcgcagccagcccagatcgacagtctggttggacgtggag
acgtctcgggaagcagctcattggctgccctggaggccggacaaagctaagggccaaaca
gaggaggactgtgacgacccagacagacaggtgttgtttgatgacatcggtccatctctc
atttgcctgccttcaccagagctccagctccgcttccttctccgtttcctgtcattcctg
gggctgcctgtagaccctgtgctctctgctgccccctgtcagccgggcctgctgctagag
aacctctctctgctaactcagggtaacgagctcaggcgtcctctgacttcctacgacctt
cctgaccctggggtcaactctattggtcacatgaccactctccagggaacaaggaagtgg
gtggggcttgggaagctgggcgagaggtttgtcactaatgtgttgaagatggtccaaact
gtccttcctgcccagctccaagccgccttgtcactcagctggatgcagtatgagaaactc
aaggtgttgcggtgcctgcatggcggcaacaaaaagcgtctccgctctctgggcaagagc
agcaaacgagtcgccaagcaactgctcaaagagcccgacaaccgctcatcgctggtgctg
tggcgcggctacggtcatctggagtggatgctgggcaacctcgacgaggcccgcaaagtg
ttctccacggccacggccatggggggaaccaaagggctgcagagccacgccctctgtgag
ctgtgtctgctgtgggcgcagctggaggtggaggatgggccaccagagcgagggggagga
cttgtagacatcactgtgtccccagctgtgtgtgtgctaaccaggctagcagagggaagc
tccacctcctccgaccaggccatctctccggtctccatcctgaaagccaggaagtcgtat
gaacaggcgctgactgctggcttgtcagcactggaacaaaactaccagaccaacaaaaaa
gcaggtaaggaagacctgcttggagagaagcccaggttgagaggcctgataggctgccac
gctctgttccagtacctcacgacaggcatccaagccgctaatgccatctacagccaggct
agagacaggattggggagctgcaccagaagctgacccaggacaagcagctgaacagcatg
gaagatgtcgctaacatcgacgttaaccagtctaaagctgattccagcctctcctgcagg
cagtatgttagccggctagcttctgagtgtgaggctctggcagtgcaacaggcagcgttg
cttaggtaccacaacagcatcagtgtgtttcccctggcaacactgaggcagacactgatc
tccgccctctccatgtgggccagcagcgcccctctgtggagcttatatgtacaggtggag
aaccgttaccatagtgcgggccgggcacgacgcttcttccactctgtaaccaggggcaac
agcagtgtagtgccacgcctttttgccattgttgcggaacaacagaggaagcagctggtt
gacgctgctcagaggtcttgttgccatgatgctgccttaccaatcctgccagagaatggg
ctcagcaaccgtattcgtggactgtttgaaagcgccatagcaacagagatggggtctcac
tgtcctttactctggaggatgtacatacacttcctggtgtcagaagggaaggtggacaaa
gctactgggatcttctacaaggccttacagaatattccctgggctaagggcttgtacatg
gacgcggtgcagctgttccctgagcatctgcaggagtttgtagatttgatgacagagaaa
gagctccgagtcagactacctttggaagaactggatatactacttgaggactga
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