Echinicola marina: KZP23_01595
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Entry
KZP23_01595 CDS
T08295
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
emai
Echinicola marina
Pathway
emai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KZP23_01595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emai03019
]
KZP23_01595
03400 DNA repair and recombination proteins [BR:
emai03400
]
KZP23_01595
Enzymes [BR:
emai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KZP23_01595
Messenger RNA biogenesis [BR:
emai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KZP23_01595
DNA repair and recombination proteins [BR:
emai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KZP23_01595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
GGDEF_2
Fe_dep_repress
Motif
Other DBs
NCBI-ProteinID:
UCS93758
LinkDB
All DBs
Position
complement(329917..331839)
Genome browser
AA seq
640 aa
AA seq
DB search
MKTKALSVLKKVFGYDDFRPMQQDIVLSVASGKDTLALLPTGGGKSVCFQVPALMQEGVC
VVVSPLIALMKDQVDNLRQRGILATAIYSGMRKREIDTTLDNCIYGNYKFLYVSPERLRT
DLFIARFKKMTVSLIAIDEAHCISQWGYDFRPPYLEIAKLREYQPDVPFIALTASATPKV
RTDIVEKLALKSPNLFVKSFARKNLSYAVRKVENKLEKAVEILKRVNGAAIVYVRSRKGC
KDLALALHQLGISATYYHAGLDKASRELRQLDWKNNKIRVMVATNAFGMGIDKPDVRVVI
HADIPENLENYYQEAGRAGRDEWKAFAVILYQDRDLELLQERAEQAYPPIEFIKRVYQSL
ANYYRIAVGSSLMVSYDFEITTFTNIYNLDVLLTYHALKILQEEGLVELNEGFYSASSFH
FLVDQKELYGYQIAQASLDPLIKVLLRMHGGELFTEYIKINEEKIAGILNVSEGQVVKLL
ERMENLGIGAYNKKKDKPQVTFLTPRFDAGRLPLNVKRISERRENSVAKAKSMVQYIENG
VLCRTLQLLSYFGEEKDEPCGVCDVCLENKRAGDLVGHLVEMRQKLLKTLNTGALFTYKE
LLSEAGFSHEDDEALKLLRQMEEEGLLISLEDGRIKKNAE
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacaaaagcattatcagtattaaaaaaggttttcggttatgatgatttcagaccg
atgcagcaggatattgtcctttctgtagccagtggaaaggatactttggccctgcttcct
acaggtggggggaagtccgtttgttttcaggtaccggccctgatgcaagagggggtttgt
gtagtggtcagcccgttaatagccttgatgaaggaccaagtagataatttgcgtcaaaga
gggattttggcgacggccatttactctggtatgcgcaagcgggaaattgatactacattg
gacaattgcatatatggtaattataagttcctgtatgtgtcccctgagcgtttaaggact
gatttatttatagcgcgtttcaagaagatgacggtcagccttattgcaatagatgaagcg
cattgtatttcacagtggggttatgattttaggcctccttatttggaaatagccaaattg
cgggagtatcagccagatgttccttttatagccctgacagcgtctgccactccaaaagtc
aggacggatatagtggagaaactggcattgaagtcccccaatttatttgtcaagtcattt
gccagaaagaacctgagttatgcggtcagaaaggtggagaataagctagagaaagccgtt
gaaattctgaaacgtgtcaatggggcggccattgtgtatgtgagaagcagaaaaggctgt
aaggatttggcccttgccttgcatcagttggggatttcggcaacctattatcatgccggt
ttggataaggcaagccgggaacttaggcaattggattggaaaaacaacaaaatcagggtc
atggtggcaaccaatgcctttgggatggggatagacaagcctgatgtgagagtggtgatc
catgcggacattcctgagaatttagagaactattaccaagaagcaggtagggctggtcgt
gatgaatggaaggcgtttgcggtcatcctttatcaagaccgggatttggagctgcttcag
gaacgggcagagcaggcttatccacctattgaatttatcaaaagggtttatcagagtttg
gccaattattaccggatagctgtaggcagcagtttgatggtgagttatgattttgagatt
acgacatttaccaatatttataatttggatgttttgctgacgtaccatgcgctgaagatt
ttgcaggaagaaggcctggtagaattgaacgaaggtttttatagtgccagttcgtttcat
tttttggtagatcagaaggagctttatggttatcagatcgcacaggcaagtttggatcca
ttgatcaaggtactgctaaggatgcatgggggggagctttttaccgagtatatcaaaatc
aatgaggaaaaaatagcgggtatcctgaatgtgtccgaggggcaggtggtcaagcttttg
gagcggatggaaaatttgggcataggagcttataataagaaaaaggacaaaccacaagta
acatttttaacgccccgttttgatgcggggaggttgccgcttaatgtaaagcggatcagt
gaaaggcgggagaatagtgtggcaaaggccaaatccatggtccagtatatagaaaatggc
gtcctttgcaggaccctacagctattgtcttatttcggggaagaaaaagatgaaccttgc
ggcgtctgtgacgtttgtttagaaaataaaagggcaggagacctagtagggcatcttgtg
gagatgaggcaaaagttattgaaaactttaaatacaggagctttgtttacctataaagag
ctcttgtcagaagctggatttagtcatgaggatgatgaagccttaaaactgcttcgacaa
atggaagaggaagggcttttgataagcttggaagatggaagaataaagaaaaacgctgaa
tga
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