Echinicola marina: KZP23_04125
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Entry
KZP23_04125 CDS
T08295
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
emai
Echinicola marina
Pathway
emai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KZP23_04125 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emai03019
]
KZP23_04125 (recQ)
03400 DNA repair and recombination proteins [BR:
emai03400
]
KZP23_04125 (recQ)
Enzymes [BR:
emai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KZP23_04125 (recQ)
Messenger RNA biogenesis [BR:
emai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KZP23_04125 (recQ)
DNA repair and recombination proteins [BR:
emai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KZP23_04125 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
Helicase_Sgs1
ResIII
Pox_I6
Motif
Other DBs
NCBI-ProteinID:
UCS94227
LinkDB
All DBs
Position
989149..991272
Genome browser
AA seq
707 aa
AA seq
DB search
MSPQEVLKNFYGYDTFRGQQEAIIKSILSGQDTIVLMPTGGGKSICYQVPAMVNEGLTLV
ISPLIALMKDQVDALNANGIPSAYLNSTQSTSEQRYISQEIQSGKLKLLYVAPERLFGGA
APLAELLKDIKLSLVAVDEAHCVSQWGHDFRPDYLQIGQFRQSFPAVPFIALTATADKQT
RKDIADKLGLKFPKWFISSFDRPNITYSVAPKRNSFDKLLDFLEYHQKNSGIIYCLSRKS
VEDTAEKLQAAGLSVLPYHAGLNREIRAANQEKFIKDEVKIVVATIAFGMGIDKSNVRFV
VHMNMPQNIEGYYQETGRAGRDGLPSEALMFYSYGDYLTLQRMIETPDNPEYSEIILGKL
TRMKTFCQLNTCRRKYLMAYFGEDEKEDCGNCDICFNKGNQQDMTIPSQMLLSTLARLNE
SFGMGYAILILKGSKSAKIQEEHKKLSVYGIGKEQTEDFWKKLGAKLIQEGYIAEAGQQF
PTLKLTTLAWSKLKSKAKILLTMDDELKRTNTKVAHETDLYEALKSLRFQLAQKEDVPPY
VIFSDATLVEMATYFPIDTESMLNISGVGQKKADTYGNDFIALISNYIKKHQLKPRKKLN
PNKKSRSGGNLGISDTERVTLKHYQEGLNLFQIAQKREMTYNTIESHLAKLVKHGKIDAE
EFISKDDILNIKLAFRRQESSYLKPLKEHFGDRYSYFQLKIALAGEK
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgagtccacaagaagtattaaagaatttttacggctatgacacttttagaggacagcaa
gaagccattatcaaaagtatactaagtggccaagacaccattgttcttatgcctactggt
ggtggtaaatccatttgctaccaagtacccgccatggttaatgaaggattgacactggtc
atttcaccattgatcgcactgatgaaggaccaagtggacgctttgaatgccaacggtatt
ccttccgcctacctcaattctacccaaagcaccagcgaacaacgttatatttcgcaggaa
attcagtccggcaaattaaaattgctttatgtcgcgccagaaagactctttggaggagct
gcgccattagctgaactattaaaggacatcaaactttctttggtagcagtggatgaggct
cactgtgtctcccaatgggggcatgatttcaggcctgattacctacagattggtcaattt
cgacagtcatttcctgctgtaccttttatagcgcttaccgctactgccgataaacaaacc
agaaaggacattgccgacaaattgggcctaaagttcccaaaatggtttatttccagcttt
gatcgtccaaatatcacttacagcgtcgctcctaagagaaattcctttgacaaactcctt
gacttcctggaataccatcagaaaaactctgggatcatttattgtctctccagaaaaagc
gtagaagatactgctgaaaaattacaagcggcgggactatctgtcctgccctaccatgca
ggcttaaacagagaaataagggcggccaatcaggaaaagttcatcaaagatgaagtaaag
atagtggtcgcaacaatagcatttggcatgggaatagacaagtcaaatgtgcgctttgtg
gtccatatgaatatgcctcaaaacatagaggggtattaccaggaaactggaagagcagga
agagatggcttaccaagcgaagccttaatgttttatagctacggagattacctcaccctt
caaaggatgatagaaacacctgataatccggaatattcggagatcatattgggcaagctt
accagaatgaaaaccttttgccagttaaatacctgcagaaggaaatacttgatggcttat
ttcggtgaagatgaaaaagaagattgtggcaattgtgatatctgtttcaacaaaggcaat
caacaggacatgaccatcccctctcaaatgctactctcgaccttggcaaggctcaatgaa
tcctttggcatgggatatgccatactgatcttaaaaggctccaaatctgctaaaatccaa
gaagagcacaaaaaattaagcgtctatggaataggaaaggaacaaaccgaagatttctgg
aaaaaactgggagctaaattaatccaggaaggctatattgccgaggctggccagcaattt
ccaacactgaagctcactaccttggcttggtcaaagcttaaatcaaaagctaaaatttta
ctcactatggatgatgagctcaaaagaacaaacaccaaagtagcccatgaaacagatctc
tatgaagcactaaaatccctacgctttcagctggcccaaaaagaagatgttccaccctat
gttattttttcggatgccactttagtcgaaatggccacctactttcctattgatacggaa
agcatgctgaacatatcaggagttggacagaaaaaagctgatacctatggaaatgatttc
atcgcattaatttcaaattatatcaaaaaacatcagttaaaacctcggaaaaagcttaat
cccaacaaaaaaagtcgatcaggaggaaatctgggaatttcagatacggaaagagtcacc
ttaaaacactatcaggaaggtcttaaccttttccaaattgcccaaaaaagagaaatgacc
tataataccattgaaagccatttagccaaattagtaaaacatggtaaaattgatgcggag
gaatttatatccaaagacgatatcctaaatattaaacttgcatttagaagacaagaaagt
agctatctcaaacccctaaaagagcactttggagaccgatattcttattttcaactaaaa
attgccttagcgggagaaaaataa
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