Echinicola marina: KZP23_04255
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Entry
KZP23_04255 CDS
T08295
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
emai
Echinicola marina
Pathway
emai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KZP23_04255 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
emai03021
]
KZP23_04255 (rho)
03019 Messenger RNA biogenesis [BR:
emai03019
]
KZP23_04255 (rho)
Transcription machinery [BR:
emai03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KZP23_04255 (rho)
Messenger RNA biogenesis [BR:
emai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KZP23_04255 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
Mor
OB_RNB
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
UCS94252
LinkDB
All DBs
Position
complement(1033259..1035019)
Genome browser
AA seq
586 aa
AA seq
DB search
MYNIEELKIRLLSELKEIAEELGVKNFKSLKKDDLIYAILDQQAITPEKALPKKKPSKAE
TEKVQTEESKAPEVEEKKESKPKFKRQNVSEVKQETAATEKAEKAAPKREKVEEKAADSS
AKPKPKAKEEVSSPAPKPQAKKEETPVKTEEENRPRSFRPRRKAVVDEEAQRVAVERPAD
ADADIPKRRNIKNQEEGAVVPSNGNKKKYAVAVKEFDGIIENEGVLEIMSDGYGFLRSLD
YNYLASPDDIYVSPSQIKLFGLKTGDNIKGQIRPPKEGEKYFALLKVSSVNGKTTEEIRD
RIPFEYLTPLFPEERLKLTTKADNFSTRIVDLFAPIGKGQRGMIVAQPKTGKTVLLQKIA
NAIAENHPECHLMILLIDERPEEVTDMARSVKAEVISSTFDEQAERHVKVSAMVLEKAKR
MVECGHDVVILLDSITRLARAYNTVVPSSGKILSGGVDANALHKPKRFFGAARNVENGGS
LTIIATALVETGSKMDEVIFEEFKGTGNMELSLDRKLSNRRIYPAIDVPGSGTRREDLLM
EKEEMQRVWILRKLMSDMTSQEAMEFLLQRMKGTRDNAEFLISMNG
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgtataatattgaagaactaaaaatcagattgctatctgaattaaaagagatagcagaa
gaacttggagttaagaatttcaagtctctaaaaaaggatgatctcatttatgccatctta
gatcagcaagctatcaccccagagaaagcccttccaaagaaaaagccttccaaagctgaa
actgagaaagtccaaactgaagaaagtaaagctcctgaagtagaagagaaaaaggaaagc
aagcctaagtttaagcgacaaaatgtttccgaagttaagcaagagactgccgcgactgag
aaggcagagaaagctgctccgaagagagagaaagtagaggaaaaggctgctgactcaagt
gcaaagccgaagcctaaggcaaaagaggaagtgagtagtccagcgccaaaacctcaagct
aagaaagaagaaacgcccgttaaaactgaggaagaaaataggcctagaagctttcggcca
agaagaaaagcagtggtggacgaggaagcgcaacgtgtggcggtagagcgtccagcggat
gctgatgctgatattccgaaaagaagaaacattaaaaaccaggaagaaggagctgttgtg
ccttccaatgggaataagaaaaaatatgccgtagccgtcaaagaatttgatggtataatt
gaaaatgagggtgttttggagatcatgtctgatggatatggtttcttgaggtcattggat
tataattatttagcatctcctgatgatatttatgtgtctccatcccaaatcaaacttttt
gggctaaagactggagataatatcaaaggacagatcaggcctccaaaagagggggagaaa
tattttgccctattgaaggtgagttctgtcaatggtaagaccacagaggaaattagggat
aggattccatttgaataccttacaccattgtttcctgaggagcgtttgaaattgactact
aaggcggataatttctctacaaggattgtagatctttttgcacctatcggtaaaggtcaa
agaggaatgatcgtggcacagcctaagacaggtaagacggtgttgttacagaagattgcc
aatgccatcgcagaaaatcatcctgagtgtcatttgatgattcttttgatcgatgaacgt
cctgaagaggtgactgatatggccagatctgtaaaggcagaggtgatttcttctaccttt
gatgagcaggctgagcgccatgtaaaggtttcggccatggttttggaaaaggccaaaaga
atggtggagtgtggacatgatgtggttatccttttggattctattaccagattggctagg
gcttataatactgtagtaccatcatcaggaaagattctttccggtggtgtggatgccaac
gcactacataagcctaagcgtttctttggtgctgccagaaatgtggagaatggtggctca
ttgaccattatcgcgacggccttggtagaaaccggttctaaaatggatgaggtaatcttt
gaggaattcaaaggtactggtaatatggaattgagcttggacagaaagctttccaacaga
aggatctatccagcgatcgatgttcctggttctggtacaaggagagaggatctattgatg
gagaaagaagagatgcaaagggtttggatcctgagaaagctgatgtcggatatgacttca
caggaagctatggagttcttgcttcaaagaatgaaaggaacaagagacaatgcagaattt
ctgatcagcatgaacggataa
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